Bo00829s040 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo00829s040 T081696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.818 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00829s040.1 C2H2 ZF 79 103
Bo00829s040.1 C2H2 ZF 108 132
Bo00829s040.1 C2H2 ZF 138 162
Bo00829s040.1 C2H2 ZF 168 193
Bo00829s040.1 C2H2 ZF 231 256

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_07918 Capronia epimyces A1O3_07918 N
A1O5_04537 Cladophialophora psammophila A1O5_04537 N
A1O7_03152 Cladophialophora yegresii A1O7_03152 N
G647_05241 Cladophialophora carrionii G647_05241 N
PV04_03333 Capronia semiimmersa PV04_03333 N
PV07_06810 Cladophialophora immunda PV07_06810 N
PV10_05386 Exophiala mesophila PV10_05386 N
PV11_00908 Exophiala sideris PV11_00908 N
Z517_10491 Fonsecaea pedrosoi Z517_10491 N
Z518_01570 Rhinocladiella mackenziei Z518_01570 N
Z519_02364 Cladophialophora bantiana Z519_02364 N