CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

YY1 *(Arabidopsis thaliana)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	AT4G06634	T080866_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
YY1 M01443_2.00	Arabidopsis thaliana	NNNVCWYNN	NNRWGBNNN	PBM Najafabadi et al.(2015a) pTH11160	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01443_2.00	C2H2 ZF	41	65	FLCSYDGCGKTFFDVSALRKHSHIH
M01443_2.00	C2H2 ZF	70	94	YVCDQEGCGKKFLDSSKLKRHYLIH
M01443_2.00	C2H2 ZF	100	124	YICTYEGCGKAFSLDFNLRSHMKTH
M01443_2.00	C2H2 ZF	130	155	HICPYSGCVKRYAHEYKLKNHVAAYH
M01443_2.00	C2H2 ZF	192	217	YACPYEGCEKAYIHEYKLKLHLKREH

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT4G06634.1	C2H2 ZF	79	103	FLCSYDGCGKTFFDVSALRKHSHIH
AT4G06634.1	C2H2 ZF	108	132	YVCDQEGCGKKFLDSSKLKRHYLIH
AT4G06634.1	C2H2 ZF	138	162	YICTYEGCGKAFSLDFNLRSHMKTH
AT4G06634.1	C2H2 ZF	168	193	HICPYSGCVKRYAHEYKLKNHVAAYH
AT4G06634.1	C2H2 ZF	230	255	YACPYEGCEKAYIHEYKLKLHLKREH
AT4G06634.2	C2H2 ZF	41	65	FLCSYDGCGKTFFDVSALRKHSHIH
AT4G06634.2	C2H2 ZF	70	94	YVCDQEGCGKKFLDSSKLKRHYLIH
AT4G06634.2	C2H2 ZF	100	124	YICTYEGCGKAFSLDFNLRSHMKTH
AT4G06634.2	C2H2 ZF	130	155	HICPYSGCVKRYAHEYKLKNHVAAYH
AT4G06634.2	C2H2 ZF	192	217	YACPYEGCEKAYIHEYKLKLHLKREH
AT4G06634.3	C2H2 ZF	68	92	FLCSYDGCGKTFFDVSALRKHSHIH
AT4G06634.3	C2H2 ZF	97	121	YVCDQEGCGKKFLDSSKLKRHYLIH
AT4G06634.3	C2H2 ZF	127	155	YICTYEGCGKLWMQAFSLDFNLRSHMKTH
AT4G06634.3	C2H2 ZF	161	186	HICPYSGCVKRYAHEYKLKNHVAAYH
AT4G06634.3	C2H2 ZF	223	248	YACPYEGCEKAYIHEYKLKLHLKREH

Links
Other C2H2 ZF family TFs
Other *Arabidopsis thaliana* TFs