Bra029186 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra029186 T081951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.817 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029186.1-P C2H2 ZF 82 106
Bra029186.1-P C2H2 ZF 111 135
Bra029186.1-P C2H2 ZF 141 165
Bra029186.1-P C2H2 ZF 171 196
Bra029186.1-P C2H2 ZF 235 260

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g023850 Brassica oleracea Bo3g023850 I 0.827
Bo00829s040 Brassica oleracea Bo00829s040 I 0.826
Bra035726 Brassica rapa Bra035726 I 0.826
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.826
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.826
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.824
YY1 Arabidopsis thaliana AT4G06634 D 0.817
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.813
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.813
Ca_00041 Cicer arietinum Ca_00041 N 0.758