Bo3g023850 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo3g023850 T081726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.817 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g023850.1 C2H2 ZF 317 341
Bo3g023850.1 C2H2 ZF 346 370
Bo3g023850.1 C2H2 ZF 376 400
Bo3g023850.1 C2H2 ZF 406 431
Bo3g023850.1 C2H2 ZF 470 495

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029186 Brassica rapa Bra029186 I 0.827
Bo00829s040 Brassica oleracea Bo00829s040 I 0.826
Bra035726 Brassica rapa Bra035726 I 0.826
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.826
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.826
Thhalv10028723m.g Eutrema salsugineum Thhalv10028723m.g I 0.824
YY1 Arabidopsis thaliana AT4G06634 D 0.817
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.813
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.813
Ca_00041 Cicer arietinum Ca_00041 N 0.758