Bra040325 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra040325 T081977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.803 0.891
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.778 0.848
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.696
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.775 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.696
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.717
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040325.1-P C2H2 ZF 168 190
Bra040325.1-P C2H2 ZF 216 238

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G25470 Brachypodium distachyon BRADI1G25470 N 0.000
F775_29547 Aegilops tauschii F775_29547 N 0.000
LPERR07G15060 Leersia perrieri LPERR07G15060 N 0.000
MLOC_59511 Hordeum vulgare MLOC_59511 N 0.000
OB07G23510 Oryza brachyantha OB07G23510 N 0.000
Sb02g035580 Sorghum bicolor Sb02g035580 N 0.000
Si030877m.g Setaria italica Si030877m.g N 0.000
Traes_2AS_FE9AC4EDD Triticum aestivum Traes_2AS_FE9AC4EDD N 0.000
Traes_2BS_7190FAD1A Triticum aestivum Traes_2BS_7190FAD1A N 0.000
Traes_2DS_B05DDA181 Triticum aestivum Traes_2DS_B05DDA181 N 0.000
Aquca_017_00706 Aquilegia coerulea Aquca_017_00706 N 0.000
Pavir.Ba00731 Panicum virgatum Pavir.Ba00731 N 0.000
Pavir.J35704 Panicum virgatum Pavir.J35704 N 0.000