Bra040971 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra040971 T081978_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 1.000
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040971.1-P C2H2 ZF 263 285
Bra040971.1-P C2H2 ZF 286 315

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si008104m.g Setaria italica Si008104m.g I
BGIOSGA022472 Oryza indica BGIOSGA022472 N
BGIOSGA022479 Oryza indica BGIOSGA022479 N
OBART06G06220 Oryza barthii OBART06G06220 N
OBART06G06230 Oryza barthii OBART06G06230 N
OGLUM06G06550 Oryza glumaepatula OGLUM06G06550 N
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N
OMERI03G32220 Oryza meridionalis OMERI03G32220 N
OMERI06G09430 Oryza meridionalis OMERI06G09430 N
ONIVA06G07220 Oryza nivara ONIVA06G07220 N
ONIVA06G09060 Oryza nivara ONIVA06G09060 N
OPUNC06G07550 Oryza punctata OPUNC06G07550 N
ORGLA06G0057300 Oryza glaberrima ORGLA06G0057300 N
ORGLA06G0057400 Oryza glaberrima ORGLA06G0057400 N
ORUFI06G06500 Oryza rufipogon ORUFI06G06500 N
ORUFI06G08090 Oryza rufipogon ORUFI06G08090 N