PRDM4 (Bos taurus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSBTAG00000012999 T087871_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000017284 C2H2 ZF 587 609
ENSBTAP00000017284 C2H2 ZF 615 637
ENSBTAP00000017284 C2H2 ZF 643 665
ENSBTAP00000017284 C2H2 ZF 671 693
ENSBTAP00000017284 C2H2 ZF 699 721
ENSBTAP00000017284 C2H2 ZF 727 748

Links

Other C2H2 ZF family TFs
Other Bos taurus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DNMT1 Homo sapiens ENSG00000130816 D
ENSSTOG00000010841 Ictidomys tridecemlineatus ENSSTOG00000010841 I
LotgiG171288 Lottia gigantea LotgiG171288 I
HelroG116156 Helobdella robusta HelroG116156 I
GB48403 Apis mellifera GB48403 I
GB47348 Apis mellifera GB47348 I
ENSXMAG00000018063 Xiphophorus maculatus ENSXMAG00000018063 I
DNMT1 Vicugna pacos ENSVPAG00000006117 I
DNMT1 Tursiops truncatus ENSTTRG00000003178 I
dnmt1 Takifugu rubripes ENSTRUG00000008132 I
dnmt1 Tetraodon nigroviridis ENSTNIG00000018567 I
ENSTGUG00000013708 Taeniopygia guttata ENSTGUG00000013708 I
NEMVEDRAFT_v1g125496 Nematostella vectensis NEMVEDRAFT_v1g125496 I
DNMT1 Sus scrofa ENSSSCG00000013659 I
ENSSHAG00000008894 Sarcophilus harrisii ENSSHAG00000008894 I
Dnmt1 Rattus norvegicus ENSRNOG00000039859 I
DNMT1 Pteropus vampyrus ENSPVAG00000003676 I
DNMT1 Pan troglodytes ENSPTRG00000010461 I
ENSPSIG00000002916 Pelodiscus sinensis ENSPSIG00000002916 I
ENSPPYG00000009545 Pongo abelii ENSPPYG00000009545 I
ENSPMAG00000002148 Petromyzon marinus ENSPMAG00000002148 I
ENSPFOG00000005624 Poecilia formosa ENSPFOG00000005624 I
DNMT1 Procavia capensis ENSPCAG00000011023 I
Gfo_R002685 Geospiza fortis Gfo_R002685 I
XP_002155714.1 Hydra magnipapillata XP_002155714.1 I
dnmt1.L Xenopus laevis XB-GENE-965566 I
dnmt1 Xenopus tropicalis XB-GENE-965562 I
dnmt1.S Xenopus laevis XB-GENE-17332488 I
Sakowv30005306m.g Saccoglossus kowalevskii Sakowv30005306m.g I
Ocbimv22034501m.g Octopus bimaculoides Ocbimv22034501m.g I
e_gw.24.105.1 Branchiostoma floridae e_gw.24.105.1 I
Pvit_03471 Pogona vitticeps Pvit_03471 I
Ogr12994 Ophisaurus gracilis Ogr12994 I
Myotis_brandtii_DNMT1_10007965 Myotis brandtii Myotis_brandtii_DNMT1_10007965 I
ENSPANG00000001264 Papio anubis ENSPANG00000001264 I
ENSP00000352516 Macaca fascicularis ENSP00000352516 I
ENSP00000352516-D1 Bos grunniens ENSP00000352516-D1 I
Cmyd_10002310 Chelonia mydas Cmyd_10002310 I
Cflo_12808--XP_001122269.1_APIME Camponotus floridanus Cflo_12808--XP_001122269.1_APIME I
Brh_R005100 Buceros rhinoceros Brh_R005100 I
Alligator_sinensis_CCG017947.1 Alligator sinensis Alligator_sinensis_CCG017947.1 I
Afo_R010037 Aptenodytes forsteri Afo_R010037 I
Aan_R006371 Calypte anna Aan_R006371 I
NV11649 Nasonia vitripennis NV11649 I
DNMT1 Choloepus hoffmanni ENSCHOG00000009490 I
DNMT1 Felis catus ENSFCAG00000012246 I
ENSFALG00000007760 Ficedula albicollis ENSFALG00000007760 I
DNMT1 Echinops telfairi ENSETEG00000012574 I
DNMT1 Equus caballus ENSECAG00000026909 I
Dnmt1 Dipodomys ordii ENSDORG00000014116 I
DNMT1 Dasypus novemcinctus ENSDNOG00000003313 I
dnmt1 Danio rerio ENSDARG00000030756 I
ENSCSAG00000007378 Chlorocebus sabaeus ENSCSAG00000007378 I
DNMT1 Cavia porcellus ENSCPOG00000019557 I
DNMT1 Callithrix jacchus ENSCJAG00000005794 I
dnmt1 Gasterosteus aculeatus ENSGACG00000013741 I
DNMT1 Canis familiaris ENSCAFG00000017892 I
DNMT1 Bos taurus ENSBTAG00000002736 I
ENSAMXG00000012182 Astyanax mexicanus ENSAMXG00000012182 I
ENSAMEG00000011823 Ailuropoda melanoleuca ENSAMEG00000011823 I
DNMT1 Anolis carolinensis ENSACAG00000003948 I
CGI_10021920 Crassostrea gigas CGI_10021920 I
CapteG160905 Capitella teleta CapteG160905 I
Aqu1.224590 Amphimedon queenslandica Aqu1.224590 I
Aqu1.204705 Amphimedon queenslandica Aqu1.204705 I
DNMT1 Monodelphis domestica ENSMODG00000005463 I
dnmt1 Oryzias latipes ENSORLG00000005582 I
DNMT1 Ochotona princeps ENSOPRG00000007032 I
ENSONIG00000001574 Oreochromis niloticus ENSONIG00000001574 I
DNMT1 Otolemur garnettii ENSOGAG00000001265 I
ENSOCUG00000008415 Oryctolagus cuniculus ENSOCUG00000008415 I
ENSOARG00000015380 Ovis aries ENSOARG00000015380 I
ENSOANG00000012255 Ornithorhynchus anatinus ENSOANG00000012255 I
ENSNLEG00000012092 Nomascus leucogenys ENSNLEG00000012092 I
Dnmt1 Mus musculus ENSMUSG00000004099 I
ENSMPUG00000006829 Mustela putorius furo ENSMPUG00000006829 I
Aqu1.203581 Amphimedon queenslandica Aqu1.203581 I
DNMT1 Macaca mulatta ENSMMUG00000014604 I
DNMT1 Myotis lucifugus ENSMLUG00000001347 I
DNMT1 Microcebus murinus ENSMICG00000010231 I
ENSMEUG00000012650 Macropus eugenii ENSMEUG00000012650 I
ENSLOCG00000007421 Lepisosteus oculatus ENSLOCG00000007421 I
DNMT1 Loxodonta africana ENSLAFG00000002818 I
ENSGMOG00000003491 Gadus morhua ENSGMOG00000003491 I
DNMT1 Gorilla gorilla ENSGGOG00000016574 I
ENSGALG00000028997 Gallus gallus ENSGALG00000028997 I