PRDM6 (Choloepus hoffmanni)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCHOG00000003085 T088775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000002735 C2H2 ZF 299 320
ENSCHOP00000002735 C2H2 ZF 327 349
ENSCHOP00000002735 C2H2 ZF 355 377
ENSCHOP00000002735 C2H2 ZF 383 404

Links

Other C2H2 ZF family TFs
Other Choloepus hoffmanni TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA07G0246500 Oryza glaberrima ORGLA07G0246500 N
Pavir.J03938 Panicum virgatum Pavir.J03938 N
Pavir.Ba00594 Panicum virgatum Pavir.Ba00594 N
TRIUR3_28482 Triticum urartu TRIUR3_28482 N
Traes_2DS_2CE71025C Triticum aestivum Traes_2DS_2CE71025C N
Traes_2BS_67D862F4A Triticum aestivum Traes_2BS_67D862F4A N
Si030697m.g Setaria italica Si030697m.g N
Sb02g036840 Sorghum bicolor Sb02g036840 N
OS07G0569700 Oryza sativa OS07G0569700 N
ORUFI07G20030 Oryza rufipogon ORUFI07G20030 N
BGIOSGA025973 Oryza indica BGIOSGA025973 N
ONIVA07G17600 Oryza nivara ONIVA07G17600 N
OLONG_002240 Oryza longistaminata OLONG_002240 N
OGLUM07G19030 Oryza glumaepatula OGLUM07G19030 N
OBART07G19250 Oryza barthii OBART07G19250 N
MLOC_52196 Hordeum vulgare MLOC_52196 N
LPERR07G16580 Leersia perrieri LPERR07G16580 N
GRMZM2G081782 Zea mays GRMZM2G081782 N
BRADI1G24140 Brachypodium distachyon BRADI1G24140 N