CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

klf9 *(Danio rerio)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSDARG00000068194	T090996_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Klf9 M00777_2.00	Mus musculus	NCCGTTAN	NTAACGGN	PBM Weirauch et al.(2013) pTH2353	0.775	0.855
KLF9 M08088_2.00	Homo sapiens	NVMCACACCCMBN	NVKGGGTGTGKBN	ChIP-seq Mathelier et al.(2014) MA1107.1	0.775	0.855
KLF9 M08880_2.00	Homo sapiens	NGCCMCGCCCMCBBS	SVVGKGGGCGKGGCN	Misc Kulakovskiy et al.(2013) KLF9_HUMAN.H11MO.0.C	0.775	0.855
Klf9 M10345_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB1_01	0.775	0.855
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSDARP00000089244	C2H2 ZF	99	123	HCCPYAGCGKIYGKSSHLKAHFRVH
ENSDARP00000089244	C2H2 ZF	129	153	FQCTWPGCAKKFSRSDELTRHFRTH
ENSDARP00000089244	C2H2 ZF	159	181	FMCPLCDKCFMRSDHLTKHARRH

Links
Other C2H2 ZF family TFs
Other *Danio rerio* TFs