GFI1B (Gallus gallus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGALG00000003478 T095837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.812 0.942
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.812 0.942
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.812 0.942
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.810 0.935
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.810 0.935
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.810 0.935
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.810 0.935
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.810 0.935
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.810 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.800 0.928
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.787 0.855
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.786 0.899
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.786 0.899
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.786 0.899
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.786 0.899
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.786 0.899
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.786 0.899
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.786 0.899
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.786 0.899
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.784 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000005496 C2H2 ZF 170 193
ENSGALP00000005496 C2H2 ZF 199 221
ENSGALP00000005496 C2H2 ZF 227 249
ENSGALP00000005496 C2H2 ZF 255 277
ENSGALP00000005496 C2H2 ZF 283 305
ENSGALP00000005496 C2H2 ZF 311 334

Links

Other C2H2 ZF family TFs
Other Gallus gallus TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
sens Drosophila melanogaster FBgn0002573 D
GFI1B Homo sapiens ENSG00000165702 D 0.810
AMEM009379 Anopheles merus AMEM009379 I
LLOJ009104 Lutzomyia longipalpis LLOJ009104 I
AMEC011115 Anopheles melas AMEC011115 I
AFAF000823 Anopheles farauti AFAF000823 I
ADIR005637 Anopheles dirus ADIR005637 I
ACOM022805 Anopheles coluzzii ACOM022805 I
AATE011452 Anopheles atroparvus AATE011452 I
LCUP007432 Lucilia cuprina LCUP007432 I
Cflo_04170--XP_001120914.1_APIME Camponotus floridanus Cflo_04170--XP_001120914.1_APIME I
TC013474 Tribolium castaneum TC013474 I
PHUM248190 Pediculus humanus PHUM248190 I
NV16026 Nasonia vitripennis NV16026 I
MESCA000812 Megaselia scalaris MESCA000812 I
LotgiG98465 Lottia gigantea LotgiG98465 I
L798_01833 Zootermopsis nevadensis L798_01833 I
ASTEI06414 Anopheles stephensi ASTEI06414 I
KGM_22443 Danaus plexippus KGM_22443 I
MDOA006012 Musca domestica MDOA006012 I
ACAC_0000515301 Angiostrongylus cantonensis ACAC_0000515301 I
BXY_1436800 Bursaphelenchus xylophilus BXY_1436800 I
DILT_0000061901 Diphyllobothrium latum DILT_0000061901 I
MhA1_Contig1061.frz3.gene12 Meloidogyne hapla MhA1_Contig1061.frz3.gene12 I
nAv.1.0.1.g05276 Acanthocheilonema viteae nAv.1.0.1.g05276 I
PTRK_0000195600 Parastrongyloides trichosuri PTRK_0000195600 I
PXEA_0001261301 Protopolystoma xenopodis PXEA_0001261301 I
RSKR_0000656700 Rhabditophanes kr3021 RSKR_0000656700 I
SPAL_0000614400 Strongyloides papillosus SPAL_0000614400 I
SSLN_0000272801 Schistocephalus solidus SSLN_0000272801 I
SSTP_0000165900 Strongyloides stercoralis SSTP_0000165900 I
SVE_0901200 Strongyloides venezuelensis SVE_0901200 I
GH16734 Drosophila grimshawi FBgn0124205 I
AAEL000869 Aedes aegypti AAEL000869 I
AGAP010926 Anopheles gambiae AGAP010926 I
BGIBMGA003190 Bombyx mori BGIBMGA003190 I
Bm9493 Brugia malayi Bm9493 I
CGI_10001094 Crassostrea gigas CGI_10001094 I
ENSAMXG00000016347 Astyanax mexicanus ENSAMXG00000016347 I
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.810
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.802
GFI1B Ochotona princeps ENSOPRG00000000125 I
GFI1 Procavia capensis ENSPCAG00000011020 I
ENSPTRG00000000961 Pan troglodytes ENSPTRG00000000961 I
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.786
GA16696 Drosophila pseudoobscura FBgn0076711 I
GF10411 Drosophila ananassae FBgn0087452 I
GG13774 Drosophila erecta FBgn0106037 I
WUBG_13248 Wuchereria bancrofti WUBG_13248 I
GI13460 Drosophila mojavensis FBgn0136216 I
GL15695 Drosophila persimilis FBgn0153299 I
GM24598 Drosophila sechellia FBgn0179461 I
GD12667 Drosophila simulans FBgn0184394 I
GJ11823 Drosophila virilis FBgn0199077 I
GK12454 Drosophila willistoni FBgn0214464 I
GE20069 Drosophila yakuba FBgn0237393 I
GA28112 Drosophila pseudoobscura FBgn0249475 I
GB48486 Apis mellifera GB48486 I
HelroG145534 Helobdella robusta HelroG145534 I
HelroG145685 Helobdella robusta HelroG145685 I
HelroG67579 Helobdella robusta HelroG67579 I
HMEL012459 Heliconius melpomene HMEL012459 I
Alligator_sinensis_CCG007190.1 Alligator sinensis Alligator_sinensis_CCG007190.1 N
tetur01g07180 Tetranychus urticae tetur01g07180 N