RSKR_0000656700 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000656700 T155899_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sens
M03666_2.00 		Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA		 SELEX
Nitta et al.(2015)
sens_1 		0.787 0.837
sens
M06056_2.00 		Drosophila melanogaster
AAATCACDGC
GCHGTGATTT		 B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573 		0.787 0.837
sens
M06057_2.00 		Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN		 B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573 		0.787 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000656700.1 C2H2 ZF 209 231
RSKR_0000656700.1 C2H2 ZF 237 259
RSKR_0000656700.1 C2H2 ZF 265 287
RSKR_0000656700.1 C2H2 ZF 293 316

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0000195600 Parastrongyloides trichosuri PTRK_0000195600 I 0.825
SPAL_0000614400 Strongyloides papillosus SPAL_0000614400 I 0.825
SSTP_0000165900 Strongyloides stercoralis SSTP_0000165900 I 0.825
SVE_0901200 Strongyloides venezuelensis SVE_0901200 I 0.825
ACAC_0000515301 Angiostrongylus cantonensis ACAC_0000515301 I 0.822
BXY_1436800 Bursaphelenchus xylophilus BXY_1436800 I 0.822
MESCA000812 Megaselia scalaris MESCA000812 I 0.811
Bm9493 Brugia malayi Bm9493 I 0.810
WUBG_13248 Wuchereria bancrofti WUBG_13248 I 0.805
nAv.1.0.1.g05276 Acanthocheilonema viteae nAv.1.0.1.g05276 I 0.805
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.802
HCOI00212900 Haemonchus contortus HCOI00212900 I 0.797
MhA1_Contig1061.frz3.gene12 Meloidogyne hapla MhA1_Contig1061.frz3.gene12 I 0.795
HelroG145685 Helobdella robusta HelroG145685 I 0.792
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.791
GFI1B Homo sapiens ENSG00000165702 D 0.791
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.791
GFI1B Ochotona princeps ENSOPRG00000000125 I 0.791
PHUM248190 Pediculus humanus PHUM248190 I 0.789
AAEL000869 Aedes aegypti AAEL000869 I 0.787
AGAP010926 Anopheles gambiae AGAP010926 I 0.787
GFI1 Procavia capensis ENSPCAG00000011020 I 0.787
ENSPTRG00000000961 Pan troglodytes ENSPTRG00000000961 I 0.787
sens Drosophila melanogaster FBgn0002573 D 0.787
GA16696 Drosophila pseudoobscura FBgn0076711 I 0.787
GF10411 Drosophila ananassae FBgn0087452 I 0.787
GG13774 Drosophila erecta FBgn0106037 I 0.787
GH16734 Drosophila grimshawi FBgn0124205 I 0.787
GI13460 Drosophila mojavensis FBgn0136216 I 0.787
GL15695 Drosophila persimilis FBgn0153299 I 0.787
GM24598 Drosophila sechellia FBgn0179461 I 0.787
GD12667 Drosophila simulans FBgn0184394 I 0.787
GJ11823 Drosophila virilis FBgn0199077 I 0.787
GK12454 Drosophila willistoni FBgn0214464 I 0.787
GE20069 Drosophila yakuba FBgn0237393 I 0.787
GA28112 Drosophila pseudoobscura FBgn0249475 I 0.787
GB48486 Apis mellifera GB48486 I 0.787
HMEL012459 Heliconius melpomene HMEL012459 I 0.787
KGM_22443 Danaus plexippus KGM_22443 I 0.787
NV16026 Nasonia vitripennis NV16026 I 0.787
LCUP007432 Lucilia cuprina LCUP007432 I 0.787
AATE011452 Anopheles atroparvus AATE011452 I 0.787
ACOM022805 Anopheles coluzzii ACOM022805 I 0.787
ADIR005637 Anopheles dirus ADIR005637 I 0.787
AFAF000823 Anopheles farauti AFAF000823 I 0.787
AMEC011115 Anopheles melas AMEC011115 I 0.787
AMEM009379 Anopheles merus AMEM009379 I 0.787
ASTEI06414 Anopheles stephensi ASTEI06414 I 0.787
LLOJ009104 Lutzomyia longipalpis LLOJ009104 I 0.787
DILT_0000061901 Diphyllobothrium latum DILT_0000061901 I 0.787
PXEA_0001261301 Protopolystoma xenopodis PXEA_0001261301 I 0.787
SSLN_0000272801 Schistocephalus solidus SSLN_0000272801 I 0.787
BGIBMGA003190 Bombyx mori BGIBMGA003190 I 0.782
ENSAMXG00000016347 Astyanax mexicanus ENSAMXG00000016347 I 0.782
Cflo_04170--XP_001120914.1_APIME Camponotus floridanus Cflo_04170--XP_001120914.1_APIME I 0.782
L798_01833 Zootermopsis nevadensis L798_01833 I 0.779
LotgiG98465 Lottia gigantea LotgiG98465 I 0.777
MDOA006012 Musca domestica MDOA006012 I 0.777
CGI_10001094 Crassostrea gigas CGI_10001094 I 0.775
TC013474 Tribolium castaneum TC013474 I 0.775
HelroG145534 Helobdella robusta HelroG145534 I 0.767
HelroG67579 Helobdella robusta HelroG67579 I 0.762