ENSGMOG00000017815 (Gadus morhua)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGMOG00000017815 T096901_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000019151 C2H2 ZF 141 163
ENSGMOP00000019151 C2H2 ZF 167 189
ENSGMOP00000019151 C2H2 ZF 195 217
ENSGMOP00000019151 C2H2 ZF 223 244

Links

Other C2H2 ZF family TFs
Other Gadus morhua TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA8 Arabidopsis thaliana AT3G54810 D
cassava37880.valid.m1 Manihot esculenta cassava37880.valid.m1 I
Thhalv10010544m.g Eutrema salsugineum Thhalv10010544m.g I
SapurV1A.0657s0040 Salix purpurea SapurV1A.0657s0040 I
SapurV1A.0518s0130 Salix purpurea SapurV1A.0518s0130 I
orange1.1g016706m.g Citrus sinensis orange1.1g016706m.g I
MDP0000243535 Malus domestica MDP0000243535 I
Gorai.011G238800 Gossypium raimondii Gorai.011G238800 I
Gorai.009G313700 Gossypium raimondii Gorai.009G313700 I
evm.TU.supercontig_546.1 Carica papaya evm.TU.supercontig_546.1 I
Eucgr.G02840 Eucalyptus grandis Eucgr.G02840 I
Ciclev10032018m.g Citrus clementina Ciclev10032018m.g I
Carubv10017647m.g Capsella rubella Carubv10017647m.g I
Cagra.1742s0041 Capsella grandiflora Cagra.1742s0041 I
Bostr.0697s0095 Boechera stricta Bostr.0697s0095 I
Cucsa.308400 Cucumis sativus Cucsa.308400 I
27494.m000044 Ricinus communis 27494.m000044 I
Ca_08487 Cicer arietinum Ca_08487 I
BME3-ZF Vitis vinifera VIT_13s0019g04390 I
TCM_043158 Theobroma cacao TCM_043158 I
POPTR_0010s23010 Populus trichocarpa POPTR_0010s23010 I
POPTR_0008s03880 Populus trichocarpa POPTR_0008s03880 I
MTR_1g094930 Medicago truncatula MTR_1g094930 I
LPERR05G19030 Leersia perrieri LPERR05G19030 I
GLYMA20G32050 Glycine max GLYMA20G32050 I
GLYMA10G35470 Glycine max GLYMA10G35470 I
BME3-ZF Arabidopsis lyrata fgenesh2_kg.5__1883__AT3G54810.2 I
Bra007099 Brassica rapa Bra007099 I
Bo8g085930 Brassica oleracea Bo8g085930 I
Bo4g118340 Brassica oleracea Bo4g118340 I