MDP0000243535 (Malus domestica)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 MDP0000243535 T196672_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.461 1.000
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.461 1.000
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.461 1.000
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.461 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000243535 GATA 1 20

Links

Other GATA family TFs
Other Malus domestica TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR05G19030 Leersia perrieri LPERR05G19030 I 0.867
Cla020871 Citrullus lanatus Cla020871 I 0.867
AMTR_s00056p00080350 Amborella trichopoda AMTR_s00056p00080350 I 0.461
GATA12 Arabidopsis thaliana AT5G25830 D 0.461
Bo1g008730 Brassica oleracea Bo1g008730 I 0.461
Bo1g008780 Brassica oleracea Bo1g008780 I 0.461
Bo7g095690 Brassica oleracea Bo7g095690 I 0.461
Bo7g115890 Brassica oleracea Bo7g115890 I 0.461
Bo9g011180 Brassica oleracea Bo9g011180 I 0.461
Bra009864 Brassica rapa Bra009864 I 0.461
Bra011393 Brassica rapa Bra011393 I 0.461
Bra036555 Brassica rapa Bra036555 I 0.461
Bra037037 Brassica rapa Bra037037 I 0.461
GLYMA04G08990 Glycine max GLYMA04G08990 I 0.461
GLYMA06G09080 Glycine max GLYMA06G09080 I 0.461
GLYMA17G27110 Glycine max GLYMA17G27110 I 0.461
GSMUA_Achr3G31720_001 Musa acuminata GSMUA_Achr3G31720_001 I 0.461
GSMUA_Achr4G02630_001 Musa acuminata GSMUA_Achr4G02630_001 I 0.461
GSMUA_Achr4G10460_001 Musa acuminata GSMUA_Achr4G10460_001 I 0.461
GSMUA_Achr6G26330_001 Musa acuminata GSMUA_Achr6G26330_001 I 0.461
POPTR_0006s25410 Populus trichocarpa POPTR_0006s25410 I 0.461
POPTR_0018s08090 Populus trichocarpa POPTR_0018s08090 I 0.461
PRUPE_ppa007038mg Prunus persica PRUPE_ppa007038mg I 0.461
PRUPE_ppa017460mg Prunus persica PRUPE_ppa017460mg I 0.461
TCM_028861 Theobroma cacao TCM_028861 I 0.461
TCM_037205 Theobroma cacao TCM_037205 I 0.461
VIT_04s0008g03270 Vitis vinifera VIT_04s0008g03270 I 0.461
Cla000908 Citrullus lanatus Cla000908 I 0.461
Cla012861 Citrullus lanatus Cla012861 I 0.461
Cla023462 Citrullus lanatus Cla023462 I 0.461
Pm013440 Prunus mume Pm013440 I 0.461
30146.m003524 Ricinus communis 30146.m003524 I 0.461
cassava1071.valid.m1 Manihot esculenta cassava1071.valid.m1 I 0.461
cassava15946.m1 Manihot esculenta cassava15946.m1 I 0.461
cassava24279.valid.m1 Manihot esculenta cassava24279.valid.m1 I 0.461
cassava34898.m1 Manihot esculenta cassava34898.m1 I 0.461
Cucsa.038810 Cucumis sativus Cucsa.038810 I 0.461
Cucsa.312530 Cucumis sativus Cucsa.312530 I 0.461
Cucsa.361150 Cucumis sativus Cucsa.361150 I 0.461
mgf010496m Mimulus guttatus mgf010496m I 0.461
mgf023969m Mimulus guttatus mgf023969m I 0.461
Aquca_013_00753 Aquilegia coerulea Aquca_013_00753 I 0.461
Aquca_069_00048 Aquilegia coerulea Aquca_069_00048 I 0.461
Bostr.29827s0236 Boechera stricta Bostr.29827s0236 I 0.461
Cagra.0701s0033 Capsella grandiflora Cagra.0701s0033 I 0.461
Carubv10001360m.g Capsella rubella Carubv10001360m.g I 0.461
Ciclev10008690m.g Citrus clementina Ciclev10008690m.g I 0.461
Eucgr.C00602 Eucalyptus grandis Eucgr.C00602 I 0.461
evm.TU.supercontig_78.7 Carica papaya evm.TU.supercontig_78.7 I 0.461
gene08990-v1.0-hybrid Fragaria vesca gene08990-v1.0-hybrid I 0.461
Gorai.003G062900 Gossypium raimondii Gorai.003G062900 I 0.461
Gorai.004G288400 Gossypium raimondii Gorai.004G288400 I 0.461
Gorai.009G049300 Gossypium raimondii Gorai.009G049300 I 0.461
Gorai.010G106100 Gossypium raimondii Gorai.010G106100 I 0.461
Lus10023684.g Linum usitatissimum Lus10023684.g I 0.461
Lus10028178.g Linum usitatissimum Lus10028178.g I 0.461
MDP0000290156 Malus domestica MDP0000290156 I 0.461
MDP0000528111 Malus domestica MDP0000528111 I 0.461
orange1.1g017390m.g Citrus sinensis orange1.1g017390m.g I 0.461
SapurV1A.0272s0170 Salix purpurea SapurV1A.0272s0170 I 0.461
SapurV1A.0291s0020 Salix purpurea SapurV1A.0291s0020 I 0.461
Thhalv10004553m.g Eutrema salsugineum Thhalv10004553m.g I 0.461
PK13609.1 Cannabis sativa PK13609.1 I 0.461