PRDM1 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000013436 T097367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 1.000
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.982
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.982
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.982
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.982
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.982
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.982
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.982
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.982
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.982
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.982
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.982
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.982
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.982
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.982
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000011245 C2H2 ZF 604 626
ENSLAFP00000011245 C2H2 ZF 632 654
ENSLAFP00000011245 C2H2 ZF 660 682
ENSLAFP00000011245 C2H2 ZF 688 710
ENSLAFP00000011245 C2H2 ZF 716 737
ENSLAFP00000019226 C2H2 ZF 626 648
ENSLAFP00000019226 C2H2 ZF 654 676
ENSLAFP00000019226 C2H2 ZF 682 704
ENSLAFP00000019226 C2H2 ZF 710 732
ENSLAFP00000019226 C2H2 ZF 738 759
ENSLAFP00000026840 C2H2 ZF 613 635
ENSLAFP00000026840 C2H2 ZF 641 663
ENSLAFP00000026840 C2H2 ZF 669 691
ENSLAFP00000026840 C2H2 ZF 697 719
ENSLAFP00000026840 C2H2 ZF 725 746

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGACG00000014840 Gasterosteus aculeatus ENSGACG00000014840 I
ENSAMXG00000003053 Astyanax mexicanus ENSAMXG00000003053 N
MAZ Danio rerio ENSDARG00000063555 N
ENSGACG00000007577 Gasterosteus aculeatus ENSGACG00000007577 N
ENSONIG00000009401 Oreochromis niloticus ENSONIG00000009401 N
ENSORLG00000000210 Oryzias latipes ENSORLG00000000210 N
ENSPFOG00000005397 Poecilia formosa ENSPFOG00000005397 N
ENSPFOG00000016219 Poecilia formosa ENSPFOG00000016219 N
ENSTNIG00000001006 Tetraodon nigroviridis ENSTNIG00000001006 N
ENSTRUG00000004091 Takifugu rubripes ENSTRUG00000004091 N
si:ch211-166g5.4 Takifugu rubripes ENSTRUG00000008158 N
ENSXMAG00000010895 Xiphophorus maculatus ENSXMAG00000010895 N