PRDM1 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000013436 T097367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 1.000
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.982
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.982
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.982
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.982
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.982
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.982
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.982
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.982
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.982
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.982
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.982
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.982
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.982
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.982
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000011245 C2H2 ZF 604 626
ENSLAFP00000011245 C2H2 ZF 632 654
ENSLAFP00000011245 C2H2 ZF 660 682
ENSLAFP00000011245 C2H2 ZF 688 710
ENSLAFP00000011245 C2H2 ZF 716 737
ENSLAFP00000019226 C2H2 ZF 626 648
ENSLAFP00000019226 C2H2 ZF 654 676
ENSLAFP00000019226 C2H2 ZF 682 704
ENSLAFP00000019226 C2H2 ZF 710 732
ENSLAFP00000019226 C2H2 ZF 738 759
ENSLAFP00000026840 C2H2 ZF 613 635
ENSLAFP00000026840 C2H2 ZF 641 663
ENSLAFP00000026840 C2H2 ZF 669 691
ENSLAFP00000026840 C2H2 ZF 697 719
ENSLAFP00000026840 C2H2 ZF 725 746

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM1 Callithrix jacchus ENSCJAG00000006332 I 0.827
Prdm1 Mus musculus ENSMUSG00000038151 D 0.827
PRDM1 Otolemur garnettii ENSOGAG00000014036 I 0.827
PRDM1 Ochotona princeps ENSOPRG00000006055 I 0.827
Prdm1 Rattus norvegicus ENSRNOG00000000323 I 0.827
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I 0.827
PRDM1 Tupaia belangeri ENSTBEG00000004089 I 0.827
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I 0.827
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I 0.825
PRDM1 Canis familiaris ENSCAFG00000003694 I 0.825
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I 0.825
PRDM1 Equus caballus ENSECAG00000009044 I 0.825
PRDM1 Felis catus ENSFCAG00000010755 I 0.825
PRDM1 Homo sapiens ENSG00000057657 D 0.825
PRDM1 Gorilla gorilla ENSGGOG00000001929 I 0.825
PRDM1 Microcebus murinus ENSMICG00000010329 I 0.825
PRDM1 Myotis lucifugus ENSMLUG00000014085 I 0.825
PRDM1 Macaca mulatta ENSMMUG00000021401 I 0.825
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I 0.825
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I 0.825
PRDM1 Ornithorhynchus anatinus ENSOANG00000004176 I 0.825
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I 0.825
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I 0.825
PRDM1 Pan troglodytes ENSPTRG00000018457 I 0.825
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I 0.825
PRDM1 Sus scrofa ENSSSCG00000004369 I 0.825
PRDM1 Tursiops truncatus ENSTTRG00000012894 I 0.825
ENSP00000358092 Macaca fascicularis ENSP00000358092 I 0.825
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I 0.825
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I 0.823
PRDM1 Sorex araneus ENSSARG00000004079 I 0.823
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I 0.820
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I 0.820
Cmyd_10006231 Chelonia mydas Cmyd_10006231 I 0.820
PRDM1 Cavia porcellus ENSCPOG00000014064 I 0.819
PRDM1 Echinops telfairi ENSETEG00000019669 I 0.819
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I 0.819
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I 0.819
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I 0.819
PRDM1 Monodelphis domestica ENSMODG00000018029 I 0.811
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I 0.784
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I 0.765