PRDM1 (Cavia porcellus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCPOG00000014064 T089976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.819 0.991
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.817 0.974
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.817 0.974
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.817 0.974
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.817 0.974
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.817 0.974
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.817 0.974
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.817 0.974
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.817 0.974
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.817 0.974
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.817 0.974
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.817 0.974
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.817 0.974
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.817 0.974
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.817 0.974
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.817 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000012667 C2H2 ZF 568 590
ENSCPOP00000012667 C2H2 ZF 596 618
ENSCPOP00000012667 C2H2 ZF 624 646
ENSCPOP00000012667 C2H2 ZF 652 674
ENSCPOP00000012667 C2H2 ZF 680 701

Links

Other C2H2 ZF family TFs
Other Cavia porcellus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I 0.827
PRDM1 Callithrix jacchus ENSCJAG00000006332 I 0.819
PRDM1 Echinops telfairi ENSETEG00000019669 I 0.819
PRDM1 Loxodonta africana ENSLAFG00000013436 I 0.819
Prdm1 Mus musculus ENSMUSG00000038151 D 0.819
PRDM1 Otolemur garnettii ENSOGAG00000014036 I 0.819
PRDM1 Ochotona princeps ENSOPRG00000006055 I 0.819
Prdm1 Rattus norvegicus ENSRNOG00000000323 I 0.819
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I 0.819
PRDM1 Tupaia belangeri ENSTBEG00000004089 I 0.819
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I 0.819
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I 0.817
PRDM1 Canis familiaris ENSCAFG00000003694 I 0.817
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I 0.817
PRDM1 Equus caballus ENSECAG00000009044 I 0.817
PRDM1 Felis catus ENSFCAG00000010755 I 0.817
PRDM1 Homo sapiens ENSG00000057657 D 0.817
PRDM1 Gorilla gorilla ENSGGOG00000001929 I 0.817
PRDM1 Microcebus murinus ENSMICG00000010329 I 0.817
PRDM1 Myotis lucifugus ENSMLUG00000014085 I 0.817
PRDM1 Macaca mulatta ENSMMUG00000021401 I 0.817
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I 0.817
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I 0.817
PRDM1 Ornithorhynchus anatinus ENSOANG00000004176 I 0.817
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I 0.817
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I 0.817
PRDM1 Pan troglodytes ENSPTRG00000018457 I 0.817
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I 0.817
PRDM1 Sus scrofa ENSSSCG00000004369 I 0.817
PRDM1 Tursiops truncatus ENSTTRG00000012894 I 0.817
ENSP00000358092 Macaca fascicularis ENSP00000358092 I 0.817
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I 0.817
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I 0.815
PRDM1 Sorex araneus ENSSARG00000004079 I 0.815
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I 0.812
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I 0.812
Cmyd_10006231 Chelonia mydas Cmyd_10006231 I 0.812
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I 0.811
PRDM1 Monodelphis domestica ENSMODG00000018029 I 0.811
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I 0.811
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I 0.792
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I 0.765