CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PRDM1
(
Monodelphis domestica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMODG00000018029
T100108_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.811
0.956
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.811
0.947
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.811
0.947
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.811
0.947
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.811
0.947
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.811
0.947
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.811
0.947
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.811
0.947
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.811
0.947
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.811
0.947
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.811
0.947
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.811
0.947
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.811
0.947
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.811
0.947
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.811
0.947
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.811
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000022480
C2H2 ZF
577
599
YECNVCSKTFGQLSNLKVHLRVH
ENSMODP00000022480
C2H2 ZF
605
627
FKCQTCNKGFTQLAHLQKHYLVH
ENSMODP00000022480
C2H2 ZF
633
655
HECQVCHKRFSSTSNLKTHLRLH
ENSMODP00000022480
C2H2 ZF
661
683
YQCKLCPAKFTQFVHLKLHKRLH
ENSMODP00000022480
C2H2 ZF
689
710
HKCTQCHKSYIHLCSLNVHLNG
Links
Other
C2H2 ZF
family TFs
Other
Monodelphis domestica
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSSHAG00000010080
Sarcophilus harrisii
ENSSHAG00000010080
I
0.819
ENSMEUG00000000043
Macropus eugenii
ENSMEUG00000000043
I
0.817
PRDM1
Microcebus murinus
ENSMICG00000010329
I
0.813
PRDM1
Ornithorhynchus anatinus
ENSOANG00000004176
I
0.813
PRDM1
Callithrix jacchus
ENSCJAG00000006332
I
0.811
PRDM1
Cavia porcellus
ENSCPOG00000014064
I
0.811
ENSCSAG00000014744
Chlorocebus sabaeus
ENSCSAG00000014744
I
0.811
PRDM1
Echinops telfairi
ENSETEG00000019669
I
0.811
PRDM1
Homo sapiens
ENSG00000057657
D
0.811
PRDM1
Gorilla gorilla
ENSGGOG00000001929
I
0.811
PRDM1
Loxodonta africana
ENSLAFG00000013436
I
0.811
PRDM1
Macaca mulatta
ENSMMUG00000021401
I
0.811
Prdm1
Mus musculus
ENSMUSG00000038151
D
0.811
ENSNLEG00000013211
Nomascus leucogenys
ENSNLEG00000013211
I
0.811
PRDM1
Oryctolagus cuniculus
ENSOCUG00000015495
I
0.811
PRDM1
Otolemur garnettii
ENSOGAG00000014036
I
0.811
PRDM1
Ochotona princeps
ENSOPRG00000006055
I
0.811
ENSPANG00000016727
Papio anubis
ENSPANG00000016727
I
0.811
ENSPPYG00000016879
Pongo abelii
ENSPPYG00000016879
I
0.811
ENSPSIG00000002661
Pelodiscus sinensis
ENSPSIG00000002661
I
0.811
PRDM1
Pan troglodytes
ENSPTRG00000018457
I
0.811
Prdm1
Rattus norvegicus
ENSRNOG00000000323
I
0.811
ENSSTOG00000016505
Ictidomys tridecemlineatus
ENSSTOG00000016505
I
0.811
PRDM1
Tupaia belangeri
ENSTBEG00000004089
I
0.811
ENSTSYG00000011666
Tarsius syrichta
ENSTSYG00000011666
I
0.811
Alligator_sinensis_CCG010485.1
Alligator sinensis
Alligator_sinensis_CCG010485.1
I
0.811
Cmyd_10006231
Chelonia mydas
Cmyd_10006231
I
0.811
ENSP00000358092
Macaca fascicularis
ENSP00000358092
I
0.811
ENSAMEG00000001482
Ailuropoda melanoleuca
ENSAMEG00000001482
I
0.808
PRDM1
Canis familiaris
ENSCAFG00000003694
I
0.808
PRDM1
Equus caballus
ENSECAG00000009044
I
0.808
PRDM1
Erinaceus europaeus
ENSEEUG00000013222
I
0.808
PRDM1
Felis catus
ENSFCAG00000010755
I
0.808
PRDM1
Myotis lucifugus
ENSMLUG00000014085
I
0.808
ENSMPUG00000009522
Mustela putorius furo
ENSMPUG00000009522
I
0.808
PRDM1
Pteropus vampyrus
ENSPVAG00000011732
I
0.808
PRDM1
Sorex araneus
ENSSARG00000004079
I
0.808
PRDM1
Sus scrofa
ENSSSCG00000004369
I
0.808
PRDM1
Tursiops truncatus
ENSTTRG00000012894
I
0.808
Myotis_brandtii_PRDM1_10034696
Myotis brandtii
Myotis_brandtii_PRDM1_10034696
I
0.808
ENSAMXG00000004952
Astyanax mexicanus
ENSAMXG00000004952
I
0.783
ENSTNIG00000012300
Tetraodon nigroviridis
ENSTNIG00000012300
I
0.768