CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG010485.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG010485.1
T133259_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.820
0.965
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.820
0.956
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.820
0.956
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.820
0.956
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.820
0.956
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.820
0.956
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.820
0.956
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.820
0.956
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.820
0.956
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.820
0.956
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.820
0.956
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.820
0.956
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.820
0.956
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.820
0.956
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.820
0.956
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.820
0.956
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG010485.1
C2H2 ZF
539
561
YECNVCSKTFGQLSNLKVHLRVH
Alligator_sinensis_CCG010485.1
C2H2 ZF
567
589
FKCQTCNKGFTQLAHLQKHYLVH
Alligator_sinensis_CCG010485.1
C2H2 ZF
595
617
HECQVCHKRFSSTSNLKTHLRLH
Alligator_sinensis_CCG010485.1
C2H2 ZF
623
645
YQCKLCPAKFTQFVHLKLHKRLH
Alligator_sinensis_CCG010485.1
C2H2 ZF
651
672
HKCVHCHKSYIHLCSLKVHLKG
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cmyd_10006231
Chelonia mydas
Cmyd_10006231
I
0.827
ENSPSIG00000002661
Pelodiscus sinensis
ENSPSIG00000002661
I
0.827
PRDM1
Sorex araneus
ENSSARG00000004079
I
0.825
PRDM1
Erinaceus europaeus
ENSEEUG00000013222
I
0.825
ENSAMEG00000001482
Ailuropoda melanoleuca
ENSAMEG00000001482
I
0.823
PRDM1
Sus scrofa
ENSSSCG00000004369
I
0.823
PRDM1
Canis familiaris
ENSCAFG00000003694
I
0.823
Myotis_brandtii_PRDM1_10034696
Myotis brandtii
Myotis_brandtii_PRDM1_10034696
I
0.823
PRDM1
Ornithorhynchus anatinus
ENSOANG00000004176
I
0.823
PRDM1
Felis catus
ENSFCAG00000010755
I
0.823
PRDM1
Tursiops truncatus
ENSTTRG00000012894
I
0.823
PRDM1
Equus caballus
ENSECAG00000009044
I
0.823
PRDM1
Myotis lucifugus
ENSMLUG00000014085
I
0.823
ENSMPUG00000009522
Mustela putorius furo
ENSMPUG00000009522
I
0.823
PRDM1
Pteropus vampyrus
ENSPVAG00000011732
I
0.823
ENSPPYG00000016879
Pongo abelii
ENSPPYG00000016879
I
0.820
ENSPANG00000016727
Papio anubis
ENSPANG00000016727
I
0.820
ENSSTOG00000016505
Ictidomys tridecemlineatus
ENSSTOG00000016505
I
0.820
ENSTSYG00000011666
Tarsius syrichta
ENSTSYG00000011666
I
0.820
ENSP00000358092
Macaca fascicularis
ENSP00000358092
I
0.820
PRDM1
Tupaia belangeri
ENSTBEG00000004089
I
0.820
PRDM1
Ochotona princeps
ENSOPRG00000006055
I
0.820
Prdm1
Rattus norvegicus
ENSRNOG00000000323
I
0.820
PRDM1
Pan troglodytes
ENSPTRG00000018457
I
0.820
ENSNLEG00000013211
Nomascus leucogenys
ENSNLEG00000013211
I
0.820
PRDM1
Gorilla gorilla
ENSGGOG00000001929
I
0.820
PRDM1
Homo sapiens
ENSG00000057657
D
0.820
ENSCSAG00000014744
Chlorocebus sabaeus
ENSCSAG00000014744
I
0.820
PRDM1
Callithrix jacchus
ENSCJAG00000006332
I
0.820
PRDM1
Otolemur garnettii
ENSOGAG00000014036
I
0.820
PRDM1
Loxodonta africana
ENSLAFG00000013436
I
0.820
Prdm1
Mus musculus
ENSMUSG00000038151
D
0.820
PRDM1
Microcebus murinus
ENSMICG00000010329
I
0.820
PRDM1
Macaca mulatta
ENSMMUG00000021401
I
0.820
ENSSHAG00000010080
Sarcophilus harrisii
ENSSHAG00000010080
I
0.819
ENSMEUG00000000043
Macropus eugenii
ENSMEUG00000000043
I
0.819
PRDM1
Oryctolagus cuniculus
ENSOCUG00000015495
I
0.812
PRDM1
Echinops telfairi
ENSETEG00000019669
I
0.812
PRDM1
Cavia porcellus
ENSCPOG00000014064
I
0.812
PRDM1
Monodelphis domestica
ENSMODG00000018029
I
0.811
ENSAMXG00000004952
Astyanax mexicanus
ENSAMXG00000004952
I
0.789
ENSTNIG00000012300
Tetraodon nigroviridis
ENSTNIG00000012300
I
0.770