SCRT1 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000031587 T097502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000025783 C2H2 ZF 120 142
ENSLAFP00000025783 C2H2 ZF 152 173
ENSLAFP00000025783 C2H2 ZF 177 199
ENSLAFP00000025783 C2H2 ZF 205 227
ENSLAFP00000025783 C2H2 ZF 233 254
ENSLAFP00000028914 C2H2 ZF 191 213
ENSLAFP00000028914 C2H2 ZF 223 244
ENSLAFP00000028914 C2H2 ZF 248 270
ENSLAFP00000028914 C2H2 ZF 276 298
ENSLAFP00000028914 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU02525 Neurospora crassa NCU02525 D
SMAC_05948 Sordaria macrospora SMAC_05948 I
OIDMADRAFT_102454 Oidiodendron maius OIDMADRAFT_102454 I
A1O1_07066 Capronia coronata A1O1_07066 I
PV05_07615 Exophiala xenobiotica PV05_07615 I
PV06_07810 Exophiala oligosperma PV06_07810 I
PV07_02470 Cladophialophora immunda PV07_02470 I
PV08_03320 Exophiala spinifera PV08_03320 I
PV10_03650 Exophiala mesophila PV10_03650 I
PV11_03661 Exophiala sideris PV11_03661 I
PVAR5_4882 Byssochlamys spectabilis PVAR5_4882 I
SBOR_7232 Sclerotinia borealis SBOR_7232 I
PV04_02180 Capronia semiimmersa PV04_02180 I
SS1G_04244 Sclerotinia sclerotiorum SS1G_04244 I
TRIATDRAFT_286212 Trichoderma atroviride TRIATDRAFT_286212 I
TRIREDRAFT_45689 Trichoderma reesei TRIREDRAFT_45689 I
UCRPA7_119 Togninia minima UCRPA7_119 I
Z517_00073 Fonsecaea pedrosoi Z517_00073 I
Z518_02716 Rhinocladiella mackenziei Z518_02716 I
Z519_10875 Cladophialophora bantiana Z519_10875 I
e_gw1.00868.17.1 Aspergillus carbonarius e_gw1.00868.17.1 I
estExt_fgenesh1_pg.C_60443 Cryphonectria parasitica estExt_fgenesh1_pg.C_60443 I
CADANGAG00009556 Aspergillus niger CADANGAG00009556 I
A1O3_04293 Capronia epimyces A1O3_04293 I
A1O5_10209 Cladophialophora psammophila A1O5_10209 I
A1O7_01995 Cladophialophora yegresii A1O7_01995 I
A1O9_06812 Exophiala aquamarina A1O9_06812 I
ACRE_069740 Acremonium chrysogenum ACRE_069740 I
Bcin01g03660 Botrytis cinerea Bcin01g03660 I
BGHDH14_bgh02635 Blumeria graminis BGHDH14_bgh02635 I
ACLA_065940 Aspergillus clavatus CADACLAG00006177 I
AFUA_7G01640 Aspergillus fumigatus CADAFUAG00001034 I
NEUTE1DRAFT_126529 Neurospora tetrasperma NEUTE1DRAFT_126529 I
ATEG_01777 Aspergillus terreus CADATEAG00002011 I
NFIA_114330 Neosartorya fischeri CADNFIAG00010501 I
CCM_06160 Cordyceps militaris CCM_06160 I
EPUS_02832 Endocarpon pusillum EPUS_02832 I
EURHEDRAFT_501316 Aspergillus ruber EURHEDRAFT_501316 I
EV44_g6209 Erysiphe necator EV44_g6209 I
HMPREF1120_04521 Exophiala dermatitidis HMPREF1120_04521 I
HMPREF1541_02301 Cyphellophora europaea HMPREF1541_02301 I
MBM_09965 Marssonina brunnea MBM_09965 I
SEPMUDRAFT_10235 Sphaerulina musiva SEPMUDRAFT_10235 N
DOTSEDRAFT_169698 Dothistroma septosporum DOTSEDRAFT_169698 N
TSTA_024030 Talaromyces stipitatus TSTA_024030 N
V499_00363 Pseudogymnoascus pannorum V499_00363 N
GMDG_01622 Pseudogymnoascus destructans GMDG_01622 N
fgenesh1_pg.C_scaffold_9000379 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_9000379 N