Prdm1 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000038151 T101145_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00		 Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.982
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.982
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.982
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.982
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.982
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.982
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.982
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.982
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.982
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.982
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.982
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.982
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.982
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.982
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000039248 C2H2 ZF 606 628
ENSMUSP00000039248 C2H2 ZF 634 656
ENSMUSP00000039248 C2H2 ZF 662 684
ENSMUSP00000039248 C2H2 ZF 690 712
ENSMUSP00000039248 C2H2 ZF 718 739
ENSMUSP00000101129 C2H2 ZF 573 595
ENSMUSP00000101129 C2H2 ZF 601 623
ENSMUSP00000101129 C2H2 ZF 629 651
ENSMUSP00000101129 C2H2 ZF 657 679
ENSMUSP00000101129 C2H2 ZF 685 706

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
IRF7 Homo sapiens ENSG00000185507 D
Irf7 Mus musculus ENSMUSG00000025498 D
ENSNLEG00000008419 Nomascus leucogenys ENSNLEG00000008419 I
ENSP00000329411-D1 Bos grunniens ENSP00000329411-D1 I
IRF7 Tursiops truncatus ENSTTRG00000011148 I
ENSSTOG00000005711 Ictidomys tridecemlineatus ENSSTOG00000005711 I
IRF7 Sus scrofa ENSSSCG00000012853 I
Irf7 Rattus norvegicus ENSRNOG00000017414 I
IRF7 Pteropus vampyrus ENSPVAG00000006873 I
IRF7 Pan troglodytes ENSPTRG00000003126 I
IRF7 Procavia capensis ENSPCAG00000010286 I
ENSPANG00000007390 Papio anubis ENSPANG00000007390 I
IRF7 Otolemur garnettii ENSOGAG00000004986 I
IRF7 Oryctolagus cuniculus ENSOCUG00000002339 I
ENSOARG00000006626 Ovis aries ENSOARG00000006626 I
ENSAMEG00000010613 Ailuropoda melanoleuca ENSAMEG00000010613 I
ENSMPUG00000008845 Mustela putorius furo ENSMPUG00000008845 I
IRF7 Macaca mulatta ENSMMUG00000004014 I
IRF7 Loxodonta africana ENSLAFG00000032120 I
IRF7 Gorilla gorilla ENSGGOG00000008341 I
IRF7 Equus caballus ENSECAG00000009744 I
Irf7 Dipodomys ordii ENSDORG00000014096 I
IRF7 Dasypus novemcinctus ENSDNOG00000006293 I
ENSCSAG00000010883 Chlorocebus sabaeus ENSCSAG00000010883 I
IRF7 Callithrix jacchus ENSCJAG00000012124 I
IRF7 Bos taurus ENSBTAG00000047680 I