PRDM1 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000014036 T103557_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 1.000
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.982
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.982
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.982
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.982
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.982
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.982
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.982
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.982
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.982
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.982
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.982
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.982
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.982
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.982
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000012568 C2H2 ZF 539 561
ENSOGAP00000012568 C2H2 ZF 567 589
ENSOGAP00000012568 C2H2 ZF 595 617
ENSOGAP00000012568 C2H2 ZF 623 645
ENSOGAP00000012568 C2H2 ZF 651 672

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF335 Homo sapiens ENSG00000198026 D
Zfp335 Mus musculus ENSMUSG00000039834 D
ENSMPUG00000017610 Mustela putorius furo ENSMPUG00000017610 I
Myotis_brandtii_ZNF335_10013703 Myotis brandtii Myotis_brandtii_ZNF335_10013703 I
ENSBTAP00000053387-D1 Bos grunniens ENSBTAP00000053387-D1 I
ZNF335 Tursiops truncatus ENSTTRG00000012103 I
ENSSTOG00000006323 Ictidomys tridecemlineatus ENSSTOG00000006323 I
Zfp335 Rattus norvegicus ENSRNOG00000017290 I
ZNF335 Pteropus vampyrus ENSPVAG00000000383 I
ZNF335 Pan troglodytes ENSPTRG00000023353 I
ENSPPYG00000011082 Pongo abelii ENSPPYG00000011082 I
ZNF335 Otolemur garnettii ENSOGAG00000015292 I
ZNF335 Oryctolagus cuniculus ENSOCUG00000016059 I
ENSAMEG00000012733 Ailuropoda melanoleuca ENSAMEG00000012733 I
ZNF335 Myotis lucifugus ENSMLUG00000000282 I
ZNF335 Loxodonta africana ENSLAFG00000016142 I
ZNF335 Equus caballus ENSECAG00000023647 I
Zfp335 Dipodomys ordii ENSDORG00000007083 I
ENSCSAG00000014693 Chlorocebus sabaeus ENSCSAG00000014693 I
ZNF335 Cavia porcellus ENSCPOG00000000138 I
ZNF335 Callithrix jacchus ENSCJAG00000017215 I
ZNF335 Canis familiaris ENSCAFG00000009882 I
ZNF335 Bos taurus ENSBTAG00000010130 I