SNAI1 (Procavia capensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPCAG00000011934 T105895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.819 0.912
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.819 0.912
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.816 0.912
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.816 0.912
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.816 0.912
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.816 0.912
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.816 0.912
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.816 0.912
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.816 0.912
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.816 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000011091 C2H2 ZF 126 148
ENSPCAP00000011091 C2H2 ZF 152 174
ENSPCAP00000011091 C2H2 ZF 180 202
ENSPCAP00000011091 C2H2 ZF 208 229

Links

Other C2H2 ZF family TFs
Other Procavia capensis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC055 Arabidopsis thaliana AT3G15500 D
NAC019 Arabidopsis thaliana AT1G52890 D
Carubv10014211m.g Capsella rubella Carubv10014211m.g I
28219.m000090 Ricinus communis 28219.m000090 I
Carubv10009816m.g Capsella rubella Carubv10009816m.g I
Carubv10005353m.g Capsella rubella Carubv10005353m.g I
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I
mgf013765m Mimulus guttatus mgf013765m I
mgf001766m Mimulus guttatus mgf001766m I
Cucsa.341800 Cucumis sativus Cucsa.341800 I
Cucsa.074610 Cucumis sativus Cucsa.074610 I
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I
PK20135.1 Cannabis sativa PK20135.1 I
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I
MDP0000262032 Malus domestica MDP0000262032 I
MDP0000132623 Malus domestica MDP0000132623 I
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I
Bra018998 Brassica rapa Bra018998 I
GLYMA06G38410 Glycine max GLYMA06G38410 I
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I
Bra027238 Brassica rapa Bra027238 I
Bra026353 Brassica rapa Bra026353 I
Bra021113 Brassica rapa Bra021113 I
Bra019052 Brassica rapa Bra019052 I
GLYMA12G22880 Glycine max GLYMA12G22880 I
Bra001596 Brassica rapa Bra001596 I
Bo7g111390 Brassica oleracea Bo7g111390 I
Bo6g030940 Brassica oleracea Bo6g030940 I
Bo5g127040 Brassica oleracea Bo5g127040 I
Bo3g066850 Brassica oleracea Bo3g066850 I
Bo1g128450 Brassica oleracea Bo1g128450 I
Bo1g048300 Brassica oleracea Bo1g048300 I
RD26 Arabidopsis thaliana AT4G27410 I
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I
Cla023770 Citrullus lanatus Cla023770 I
Cla011949 Citrullus lanatus Cla011949 I
Ca_21186 Cicer arietinum Ca_21186 I
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I
TCM_031364 Theobroma cacao TCM_031364 I
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I
Pm011603 Prunus mume Pm011603 I
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I
MTR_8g059170 Medicago truncatula MTR_8g059170 I
MTR_2g079990 Medicago truncatula MTR_2g079990 I
GLYMA13G35550 Glycine max GLYMA13G35550 I
GLYMA12G35000 Glycine max GLYMA12G35000 I