Prdm4 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000004962 T108897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.824 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.824 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.824 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.824 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000006886 C2H2 ZF 586 608
ENSRNOP00000006886 C2H2 ZF 614 636
ENSRNOP00000006886 C2H2 ZF 642 664
ENSRNOP00000006886 C2H2 ZF 670 692
ENSRNOP00000006886 C2H2 ZF 698 720
ENSRNOP00000006886 C2H2 ZF 726 747

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM4 Homo sapiens ENSG00000110851 D 0.824
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.824
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.824
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.824
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.824
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.824
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.824
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.824
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.817
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.824
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.824
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.824
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.821
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.821
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.824
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.824
Aan_R008654 Calypte anna Aan_R008654 I 0.821
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.821
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.819
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.821
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.817
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.824
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.824
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.821
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.824
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.817
Tal_R009708 Tyto alba Tal_R009708 I 0.821
PRDM4 Felis catus ENSFCAG00000022478 I 0.824
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.824
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.821
PRDM4 Bos taurus ENSBTAG00000012999 I 0.824
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.824
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.820
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.824
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.819
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.824
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.824
PRDM4 Equus caballus ENSECAG00000015423 I 0.824
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.782
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.821
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.819
PRDM4 Gallus gallus ENSGALG00000012619 I 0.821
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.824
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.824
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.819
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.821
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.799
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.824
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.824
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.819
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.824
Prdm4 Mus musculus ENSMUSG00000035529 I 0.824
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.809