SCRT1 (Sus scrofa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSSSCG00000025879 T110539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000022011 C2H2 ZF 136 158
ENSSSCP00000022011 C2H2 ZF 168 189
ENSSSCP00000022011 C2H2 ZF 193 215
ENSSSCP00000022011 C2H2 ZF 221 243
ENSSSCP00000022011 C2H2 ZF 249 270

Links

Other C2H2 ZF family TFs
Other Sus scrofa TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA12G14900 Oryza nivara ONIVA12G14900 N 0.000
Pavir.J28748 Panicum virgatum Pavir.J28748 N 0.000
Traes_5DS_C06FE6037 Triticum aestivum Traes_5DS_C06FE6037 N 0.000
Traes_5DL_E275797CE Triticum aestivum Traes_5DL_E275797CE N 0.000
Traes_5BS_ED54C58C5 Triticum aestivum Traes_5BS_ED54C58C5 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
OS12G0573200 Oryza sativa OS12G0573200 N 0.000
ORUFI12G18360 Oryza rufipogon ORUFI12G18360 N 0.000
ORGLA12G0207400 Oryza glaberrima ORGLA12G0207400 N 0.000
ORGLA12G0145700 Oryza glaberrima ORGLA12G0145700 N 0.000
OPUNC12G15050 Oryza punctata OPUNC12G15050 N 0.000
BGIOSGA037646 Oryza indica BGIOSGA037646 N 0.000
OMERI12G11530 Oryza meridionalis OMERI12G11530 N 0.000
OGLUM12G18120 Oryza glumaepatula OGLUM12G18120 N 0.000
OBART12G16530 Oryza barthii OBART12G16530 N 0.000
OB12G23410 Oryza brachyantha OB12G23410 N 0.000
MLOC_21297 Hordeum vulgare MLOC_21297 N 0.000
LPERR12G13750 Leersia perrieri LPERR12G13750 N 0.000
GRMZM2G179325 Zea mays GRMZM2G179325 N 0.000
GRMZM2G159475 Zea mays GRMZM2G159475 N 0.000
F775_32974 Aegilops tauschii F775_32974 N 0.000
BRADI4G03867 Brachypodium distachyon BRADI4G03867 N 0.000