ENSXMAG00000002498 (Xiphophorus maculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSXMAG00000002498 T113739_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.827 1.000
Osr1
M00144_2.00 		Mus musculus
NVCTHCYNN
NNRGDAGBN		 PBM
Badis et al.(2009)
Osr1_3033 		0.811 0.986
Osr1
M01174_2.00 		Mus musculus
GCTACYGT
ACRGTAGC		 PBM
Lambert et al.(2019)
pTH5339 		0.811 0.986
OSR1
M04477_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX 		0.811 0.986
OSR1
M04478_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX 		0.811 0.986
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.770 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000002494 C2H2 ZF 169 191
ENSXMAP00000002494 C2H2 ZF 197 219
ENSXMAP00000002494 C2H2 ZF 225 247

Links

Other C2H2 ZF family TFs
Other Xiphophorus maculatus TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK03576.1 Cannabis sativa PK03576.1 D
Ca_05750 Cicer arietinum Ca_05750 I
GLYMA08G01810 Glycine max GLYMA08G01810 I
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I
MTR_8g098275 Medicago truncatula MTR_8g098275 I
POPTR_0003s12810 Populus trichocarpa POPTR_0003s12810 I
PRUPE_ppa002762mg Prunus persica PRUPE_ppa002762mg I
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I
TCM_016261 Theobroma cacao TCM_016261 I
Carubv10002462m.g Capsella rubella Carubv10002462m.g I
Carubv10004345m.g Capsella rubella Carubv10004345m.g I
Pm023805 Prunus mume Pm023805 I
cassava8594.m1 Manihot esculenta cassava8594.m1 I
mgf005803m Mimulus guttatus mgf005803m I
Bostr.25463s0338 Boechera stricta Bostr.25463s0338 I
Bostr.7200s0145 Boechera stricta Bostr.7200s0145 I
Cagra.1664s0001 Capsella grandiflora Cagra.1664s0001 I
GL3 Arabidopsis lyrata fgenesh2_kg.7__3280__AT5G41315.1 I
TT8 Arabidopsis lyrata fgenesh2_kg.6__2968__AT4G09820.1 I
gene32494-v1.0-hybrid Fragaria vesca gene32494-v1.0-hybrid I
Bra025508 Brassica rapa Bra025508 I
Thhalv10027709m.g Eutrema salsugineum Thhalv10027709m.g I
Bo4g141990 Brassica oleracea Bo4g141990 I
GL3 Arabidopsis thaliana AT5G41315 I
TT8 Arabidopsis thaliana AT4G09820 I
LjSGA_008146.1 Lotus japonicus LjSGA_008146.1 I
Sb06g016380 Sorghum bicolor Sb06g016380 N
Carubv10019965m.g Capsella rubella Carubv10019965m.g N
evm.TU.supercontig_537.2 Carica papaya evm.TU.supercontig_537.2 N
Gorai.007G023500 Gossypium raimondii Gorai.007G023500 N
SapurV1A.0612s0160 Salix purpurea SapurV1A.0612s0160 N
Thhalv10023356m.g Eutrema salsugineum Thhalv10023356m.g N
Cagra.2104s0007 Capsella grandiflora Cagra.2104s0007 N
Bostr.29223s0199 Boechera stricta Bostr.29223s0199 N
VIT_02s0025g03450 Vitis vinifera VIT_02s0025g03450 N
GLYMA05G37770 Glycine max GLYMA05G37770 N
EGL3 Arabidopsis lyrata fgenesh2_kg.2__120__AT1G63650.2 N
Bra037887 Brassica rapa Bra037887 N
Bra027796 Brassica rapa Bra027796 N
Bra027653 Brassica rapa Bra027653 N
Bo9g086920 Brassica oleracea Bo9g086920 N
Bo9g086910 Brassica oleracea Bo9g086910 N
Bo9g029230 Brassica oleracea Bo9g029230 N
BHLH127 Arabidopsis thaliana AT4G28815 N
BHLH2 Arabidopsis thaliana AT1G63650 N