lmd (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0039039 T114578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lmd
M00564_2.00		 Drosophila melanogaster
NNCCCCCCVS
SBGGGGGGNN		 PBM
Busser et al.(2012b)
Lmd		 (Direct) (Direct)
lmd
M03702_2.00		 Drosophila melanogaster
BVCCCCCCRCNDHSH
DSDHNGYGGGGGGBV		 SELEX
Nitta et al.(2015)
lmd_1		 (Direct) (Direct)
lmd
M06157_2.00		 Drosophila melanogaster
MVKVCCCCCYRCNG
CNGYRGGGGGBMBK		 B1H
Zhu et al.(2011)
lmd_SANGER_5_FBgn0039039		 (Direct) (Direct)
lmd
M06158_2.00		 Drosophila melanogaster
NNNMCCCCCYRSNRN
NYNSYRGGGGGKNNN		 B1H
Zhu et al.(2011)
lmd_SOLEXA_5_FBgn0039039		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00564_2.00 C2H2 ZF 32 57
M00564_2.00 C2H2 ZF 66 93
M00564_2.00 C2H2 ZF 100 123
M00564_2.00 C2H2 ZF 129 153
M00564_2.00 C2H2 ZF 159 183

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083757 C2H2 ZF 435 460
FBpp0083757 C2H2 ZF 469 496
FBpp0083757 C2H2 ZF 503 526
FBpp0083757 C2H2 ZF 532 556
FBpp0083757 C2H2 ZF 562 586
FBpp0307995 C2H2 ZF 6 25
FBpp0307995 C2H2 ZF 31 55
FBpp0307995 C2H2 ZF 61 85

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE05176 Caenorhabditis remanei CRE05176 I
TELCIR_03315 Teladorsagia circumcincta TELCIR_03315 I
SMUV_0000808801 Syphacia muris SMUV_0000808801 I
HPLM_0001799301 Haemonchus placei HPLM_0001799301 I
DME_0000089401 Dracunculus medinensis DME_0000089401 I
DICVIV_07866 Dictyocaulus viviparus DICVIV_07866 I
ANCCAN_20966 Ancylostoma caninum ANCCAN_20966 I
L893_g18186 Steinernema glaseri L893_g18186 N
Bm6751 Brugia malayi Bm6751 N
TCNE_0001371701 Toxocara canis TCNE_0001371701 N
TCLT_0000932101 Thelazia callipaeda TCLT_0000932101 N
WBGene00246765 Onchocerca volvulus WBGene00246765 N
nDi.2.2.2.g08383 Dirofilaria immitis nDi.2.2.2.g08383 N
MhA1_Contig131.frz3.gene12 Meloidogyne hapla MhA1_Contig131.frz3.gene12 N
maker-nMf.1.1.scaf14853-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf14853-snap-gene-0.4 N
L898_g139 Steinernema monticolum L898_g139 N
ASU_12809 Ascaris suum ASU_12809 N
L892_g4460 Steinernema scapterisci L892_g4460 N
L889_g12838 Steinernema feltiae L889_g12838 N
L596_g3695 Steinernema carpocapsae L596_g3695 N
Minc08811 Meloidogyne incognita Minc08811 N
ALUE_0001936401 Ascaris lumbricoides ALUE_0001936401 N
BTMF_0000069401 Brugia timori BTMF_0000069401 N