CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

NEMVEDRAFT_v1g229565 *(Nematostella vectensis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	NEMVEDRAFT_v1g229565	T124220_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
luna M03704_2.00	Drosophila melanogaster	RCCACRCCCH	DGGGYGTGGY	SELEX Nitta et al.(2015) luna_1	0.803	0.899
luna M06163_2.00	Drosophila melanogaster	RRMHMCRCCC	GGGYGKDKYY	B1H Zhu et al.(2011) luna_SANGER_5_FBgn0040765	0.803	0.899
luna M06164_2.00	Drosophila melanogaster	DRCCMCGCCCHNNN	NNNDGGGCGKGGYH	B1H Zhu et al.(2011) luna_SOLEXA_5_FBgn0040765	0.803	0.899
Klf7 M00134_2.00	Mus musculus	NHHMCRCCCH	DGGGYGKDDN	PBM Badis et al.(2009) Klf7_0974	0.791	0.899
KLF7 M08298_2.00	Homo sapiens	VVCHMCGCCCH	DGGGCGKDGBB	ChIP-seq Schmitges et al.(2016) O75840.MEME	0.791	0.899
Klf12 M00787_2.00	Mus musculus	NNHMCRCCCH	DGGGYGKDNN	PBM Weirauch et al.(2013) pTH0977	0.781	0.841
Klf12 M02937_2.00	Mus musculus	GRCCACGCCCWHHHN	NDDDWGGGCGTGGYC	SELEX Jolma et al.(2013) Klf12_1	0.781	0.841
KLF12 M04430_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF12_FL_HT-SELEX	0.781	0.841
KLF12 M08299_2.00	Homo sapiens	SBNVGCCMCGCCCHB	VDGGGCGKGGCBNVS	ChIP-seq Schmitges et al.(2016) Q9Y4X4.MEME	0.781	0.841
KLF12 M08879_2.00	Homo sapiens	GCCCCGCCCYB	VRGGGCGGGGC	Misc Kulakovskiy et al.(2013) KLF12_HUMAN.H11MO.0.C	0.781	0.841
KLF12 M10186_2.00	Homo sapiens	HMYACDG	CHGTRKD	Transfac Matys et al.(2006) V$AP2REP_01	0.781	0.841
KLF12 M04431_2.00	Homo sapiens	RGSCGACGCCCN	NGGGCGTCGSCY	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_1	0.781	0.841
KLF12 M04432_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF12_FL_Methyl-HT-SELEX_2	0.781	0.841
CG42741 M06169_2.00	Drosophila melanogaster	RCCACRCCCWHY	RDWGGGYGTGGY	B1H Zhu et al.(2011) CG9895_SANGER_10_FBgn0034810	0.778	0.841
CG42741 M06170_2.00	Drosophila melanogaster	VRCCACRCCCH	DGGGYGTGGYB	B1H Zhu et al.(2011) CG9895_SOLEXA_5_FBgn0034810	0.778	0.841
KLF6 M04400_2.00	Homo sapiens	NVMCACRCCCH	DGGGYGTGKBN	SELEX Yin et al.(2017) KLF6_eDBD_HT-SELEX	0.775	0.870
KLF6 M08857_2.00	Homo sapiens	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_HUMAN.H11MO.0.A	0.775	0.870
Klf6 M08962_2.00	Mus musculus	BYBYVNBCYMCDCCCYBBN	NVVRGGGHGKRGVNBRVRV	Misc Kulakovskiy et al.(2013) KLF6_MOUSE.H11MO.0.B	0.775	0.870
KLF6 M10113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CPBP_Q6	0.775	0.870
KLF6 M04401_2.00	Homo sapiens	NRCCACGCCCH	DGGGCGTGGYN	SELEX Yin et al.(2017) KLF6_eDBD_Methyl-HT-SELEX	0.775	0.870
Klf8 M00779_2.00	Mus musculus	NNNMCRCCYN	NRGGYGKNNN	PBM Weirauch et al.(2013) pTH3086	0.771	0.812
KLF8 M08867_2.00	Homo sapiens	CACMCMCKG	CMGKGKGTG	Misc Kulakovskiy et al.(2013) KLF8_HUMAN.H11MO.0.C	0.771	0.812
Klf8 M09000_2.00	Mus musculus	CACMCMCKG	CMGKGKGTG	Misc Kulakovskiy et al.(2013) KLF8_MOUSE.H11MO.0.C	0.771	0.812
KLF8 M10147_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF8_Q5_01	0.771	0.812
KLF8 M10148_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF8_Q5	0.771	0.812
KLF5 M04410_2.00	Homo sapiens	NMCACRCCCH	DGGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_HT-SELEX	0.771	0.855
KLF5 M08086_2.00	Homo sapiens	BCCMCDCCCH	DGGGHGKGGV	ChIP-seq Mathelier et al.(2014) MA0599.1	0.771	0.855
KLF5 M08868_2.00	Homo sapiens	NHVNRCCMCDCCCH	DGGGHGKGGYNBDN	Misc Kulakovskiy et al.(2013) KLF5_HUMAN.H11MO.0.A	0.771	0.855
Klf5 M08965_2.00	Mus musculus	KCCMCDCCCHBBBCH	DGVVVDGGGHGKGGM	Misc Kulakovskiy et al.(2013) KLF5_MOUSE.H11MO.0.A	0.771	0.855
KLF5 M09502_2.00	Homo sapiens	GCCMCRCCCH	DGGGYGKGGC	Misc Heinz et al.(2010) LoVo-KLF5_GSE49402	0.771	0.855
KLF5 M10149_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3_01	0.771	0.855
KLF5 M10150_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$BTEB2_Q3	0.771	0.855
KLF5 M04411_2.00	Homo sapiens	NMCACRCCYH	DRGGYGTGKN	SELEX Yin et al.(2017) KLF5_eDBD_Methyl-HT-SELEX	0.771	0.855
KLF3 M04418_2.00	Homo sapiens	RRCCRCGCCCH	DGGGCGYGGYY	SELEX Yin et al.(2017) KLF3_FL_HT-SELEX	0.771	0.826
KLF3 M08876_2.00	Homo sapiens	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_HUMAN.H11MO.0.B	0.771	0.826
Klf3 M08982_2.00	Mus musculus	NSNNVCCMCRCCCHBBBBN	NVVVVDGGGYGKGGBNNSN	Misc Kulakovskiy et al.(2013) KLF3_MOUSE.H11MO.0.A	0.771	0.826
KLF3 M10172_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3_01	0.771	0.826
KLF3 M10173_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$KLF3_Q3	0.771	0.826
KLF3 M04419_2.00	Homo sapiens	DRCCACGCCCH	DGGGCGTGGYH	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_1	0.771	0.826
KLF3 M04420_2.00	Homo sapiens	RRSCGCARCCCN	NGGGYTGCGSYY	SELEX Yin et al.(2017) KLF3_FL_Methyl-HT-SELEX_2	0.771	0.826
klf-3 M00617_2.00	Caenorhabditis elegans	NHMCGCCCH	DGGGCGKDN	PBM Narasimhan et al.(2015) pTH9072	0.761	0.754
dar1 M06171_2.00	Drosophila melanogaster	RMCACACCCWH	DWGGGTGTGKY	B1H Zhu et al.(2011) CG12029_SANGER_10_FBgn0035454	0.761	0.797
dar1 M06172_2.00	Drosophila melanogaster	NNNRCCACRCCCHNN	NNDGGGYGTGGYNNN	B1H Zhu et al.(2011) CG12029_SOLEXA_5_FBgn0035454	0.761	0.797
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EDO40483	C2H2 ZF	7	31	HKCDYEGCTKVYTKSSHLKAHRRTH
EDO40483	C2H2 ZF	37	61	YKCSWEGCSWRFARSDELTRHYRKH
EDO40483	C2H2 ZF	67	89	FKCVHCDRCFSRSDHLSLHMKRH

Links
Other C2H2 ZF family TFs
Other *Nematostella vectensis* TFs

592 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_22234	Aegilops tauschii	F775_22234	N
LPERR01G04110	Leersia perrieri	LPERR01G04110	N
MLOC_19052	Hordeum vulgare	MLOC_19052	N
OB01G14200	Oryza brachyantha	OB01G14200	N
OBART01G04450	Oryza barthii	OBART01G04450	N
ORUFI01G04650	Oryza rufipogon	ORUFI01G04650	N
Sb05g001215	Sorghum bicolor	Sb05g001215	N
Si002595m.g	Setaria italica	Si002595m.g	N
TRAES3BF059600070CFD_g	Triticum aestivum	TRAES3BF059600070CFD_g	N
TRIUR3_34833	Triticum urartu	TRIUR3_34833	N
Pavir.Eb00461	Panicum virgatum	Pavir.Eb00461	N
Pavir.J24104	Panicum virgatum	Pavir.J24104	N

NEMVEDRAFT_v1g229565 (Nematostella vectensis) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

592 Related TFs

NEMVEDRAFT_v1g229565 **(Nematostella vectensis)
C2H2 ZF**