VDBG_04686 (Verticillium alfalfae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 VDBG_04686 T131369_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
msn-1
M01192_2.00 		Neurospora crassa
VCCCCTDW
WHAGGGGB		 PBM
Lambert et al.(2019)
pTH8923 		0.761 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY18577 C2H2 ZF 453 476
EEY18577 C2H2 ZF 482 504

Links

Other C2H2 ZF family TFs
Other Verticillium alfalfae TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Minc15189 Meloidogyne incognita Minc15189 N 0.000
snap_masked-nMf.1.1.scaf04875-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf04875-processed-gene-0.3 N 0.000
maker-nMf.1.1.scaf16687-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf16687-augustus-gene-0.4 N 0.000
maker-nMf.1.1.scaf12853-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf12853-augustus-gene-0.4 N 0.000
maker-nMf.1.1.scaf06884-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf06884-augustus-gene-0.5 N 0.000
maker-nMf.1.1.scaf06196-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf06196-snap-gene-0.8 N 0.000
maker-nMf.1.1.scaf06148-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf06148-augustus-gene-0.3 N 0.000
maker-nMf.1.1.scaf04006-snap-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf04006-snap-gene-0.9 N 0.000
augustus_masked-nMf.1.1.scaf18998-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf18998-processed-gene-0.0 N 0.000
Minc02054 Meloidogyne incognita Minc02054 N 0.000
Minc15187 Meloidogyne incognita Minc15187 N 0.000
Minc09143 Meloidogyne incognita Minc09143 N 0.000
Minc09142 Meloidogyne incognita Minc09142 N 0.000
Minc09140 Meloidogyne incognita Minc09140 N 0.000
Minc07964 Meloidogyne incognita Minc07964 N 0.000
Minc07962 Meloidogyne incognita Minc07962 N 0.000
Minc04725 Meloidogyne incognita Minc04725 N 0.000
Minc02055 Meloidogyne incognita Minc02055 N 0.000