CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf18998-processed-gene-0.0
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
augustus_masked-nMf.1.1.scaf18998-processed-gene-0.0
T308223_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf18998-processed-gene-0.0-mRNA-1
Nuclear receptor
67
130
TECCICERIASGYLFYGVNCCDGCKHFFNRSITSKNKYKCEKDGNCNLSNSNFLQLNVIWVKGC
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
maker-nMf.1.1.scaf16687-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf16687-augustus-gene-0.4
N
0.856
augustus_masked-nMf.1.1.scaf03109-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03109-processed-gene-0.1
N
0.773
maker-nMf.1.1.scaf04006-snap-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf04006-snap-gene-0.9
N
0.769
Minc07962
Meloidogyne incognita
Minc07962
N
0.749
Minc07964
Meloidogyne incognita
Minc07964
N
0.749