ref-2 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00004335 T131569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ref-2
M00621_2.00		 Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.757 0.739
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.757 0.739
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.757 0.739
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.757 0.739
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00621_2.00 C2H2 ZF 51 78
M00621_2.00 C2H2 ZF 84 106
M00621_2.00 C2H2 ZF 112 136
M00621_2.00 C2H2 ZF 142 166

DNA Binding Domains

Protein ID Domain From To Sequence
C47C12.3a.1 C2H2 ZF 106 133
C47C12.3a.1 C2H2 ZF 139 161
C47C12.3a.1 C2H2 ZF 167 191
C47C12.3a.1 C2H2 ZF 197 221
C47C12.3a.2 C2H2 ZF 106 133
C47C12.3a.2 C2H2 ZF 139 161
C47C12.3a.2 C2H2 ZF 167 191
C47C12.3a.2 C2H2 ZF 197 221
C47C12.3b C2H2 ZF 119 146
C47C12.3b C2H2 ZF 152 174
C47C12.3b C2H2 ZF 180 204
C47C12.3b C2H2 ZF 210 234

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC035 Arabidopsis thaliana AT2G02450 D
AMTR_s00059p00187950 Amborella trichopoda AMTR_s00059p00187950 I
AMTR_s00099p00163300 Amborella trichopoda AMTR_s00099p00163300 I
BGIOSGA004950 Oryza indica BGIOSGA004950 I
BGIOSGA004951 Oryza indica BGIOSGA004951 I
BGIOSGA018041 Oryza indica BGIOSGA018041 I
BGIOSGA027877 Oryza indica BGIOSGA027877 I
Bo2g136280 Brassica oleracea Bo2g136280 I
Bo7g080470 Brassica oleracea Bo7g080470 I
Bo9g071690 Brassica oleracea Bo9g071690 I
Bra017416 Brassica rapa Bra017416 I
Bra024818 Brassica rapa Bra024818 I
Bra026595 Brassica rapa Bra026595 I
BRADI2G25150 Brachypodium distachyon BRADI2G25150 I
BRADI2G57297 Brachypodium distachyon BRADI2G57297 I
F775_01256 Aegilops tauschii F775_01256 I
F775_03877 Aegilops tauschii F775_03877 I
ANAC034 Arabidopsis lyrata fgenesh2_kg.5__152__AT2G02450.1 I
GLYMA07G40140 Glycine max GLYMA07G40140 I
GLYMA17G00650 Glycine max GLYMA17G00650 I
GRMZM2G134687 Zea mays GRMZM2G134687 I
GRMZM2G147867 Zea mays GRMZM2G147867 I
GRMZM5G813651 Zea mays GRMZM5G813651 I
GSMUA_Achr10G04320_001 Musa acuminata GSMUA_Achr10G04320_001 I
GSMUA_Achr10G10690_001 Musa acuminata GSMUA_Achr10G10690_001 I
GSMUA_Achr11G08970_001 Musa acuminata GSMUA_Achr11G08970_001 I
GSMUA_Achr3G21690_001 Musa acuminata GSMUA_Achr3G21690_001 I
GSMUA_Achr5G17060_001 Musa acuminata GSMUA_Achr5G17060_001 I
GSMUA_Achr7G23650_001 Musa acuminata GSMUA_Achr7G23650_001 I
LPERR01G34330 Leersia perrieri LPERR01G34330 I
LPERR05G13320 Leersia perrieri LPERR05G13320 I
LPERR08G01330 Leersia perrieri LPERR08G01330 I
MLOC_57215 Hordeum vulgare MLOC_57215 I
MLOC_69621 Hordeum vulgare MLOC_69621 I
MTR_4g134460 Medicago truncatula MTR_4g134460 I
OB01G48600 Oryza brachyantha OB01G48600 I
OB05G24670 Oryza brachyantha OB05G24670 I
OB08G11180 Oryza brachyantha OB08G11180 I
OBART01G39900 Oryza barthii OBART01G39900 I
OBART05G16760 Oryza barthii OBART05G16760 I
OBART08G01010 Oryza barthii OBART08G01010 I
OGLUM01G44090 Oryza glumaepatula OGLUM01G44090 I
OGLUM05G17770 Oryza glumaepatula OGLUM05G17770 I
OGLUM08G01070 Oryza glumaepatula OGLUM08G01070 I
OLONG_011893 Oryza longistaminata OLONG_011893 I
OLONG_025605 Oryza longistaminata OLONG_025605 I
OMERI05G14550 Oryza meridionalis OMERI05G14550 I
OMERI08G01230 Oryza meridionalis OMERI08G01230 I
ONIVA01G44740 Oryza nivara ONIVA01G44740 I
ONIVA05G17420 Oryza nivara ONIVA05G17420 I
ONIVA08G01010 Oryza nivara ONIVA08G01010 I
OPUNC01G38590 Oryza punctata OPUNC01G38590 I
OPUNC05G14760 Oryza punctata OPUNC05G14760 I
OPUNC08G00950 Oryza punctata OPUNC08G00950 I
ORGLA01G0337900 Oryza glaberrima ORGLA01G0337900 I
ORGLA05G0144900 Oryza glaberrima ORGLA05G0144900 I
ORGLA08G0004000 Oryza glaberrima ORGLA08G0004000 I
ORUFI01G43220 Oryza rufipogon ORUFI01G43220 I
ORUFI05G17970 Oryza rufipogon ORUFI05G17970 I
ORUFI08G01040 Oryza rufipogon ORUFI08G01040 I
OS01G0888300 Oryza sativa OS01G0888300 I
OS05G0418800 Oryza sativa OS05G0418800 I
PGSC0003DMG400018262 Solanum tuberosum PGSC0003DMG400018262 I
POPTR_0003s03670 Populus trichocarpa POPTR_0003s03670 I
POPTR_0004s23970 Populus trichocarpa POPTR_0004s23970 I
PRUPE_ppa021989m2g Prunus persica PRUPE_ppa021989m2g I
Sb03g042210 Sorghum bicolor Sb03g042210 I
Sb09g020590 Sorghum bicolor Sb09g020590 I
Si001651m.g Setaria italica Si001651m.g I
Si022103m.g Setaria italica Si022103m.g I
Solyc01g102740.2 Solanum lycopersicum Solyc01g102740.2 I
TCM_027945 Theobroma cacao TCM_027945 I
Traes_3AL_490F09661 Triticum aestivum Traes_3AL_490F09661 I
TRAES3BF097200010CFD_g Triticum aestivum TRAES3BF097200010CFD_g I
TRAES3BF098000010CFD_g Triticum aestivum TRAES3BF098000010CFD_g I
TRAES3BF114300070CFD_g Triticum aestivum TRAES3BF114300070CFD_g I
TRIUR3_28413 Triticum urartu TRIUR3_28413 I
TRIUR3_29543 Triticum urartu TRIUR3_29543 I
ANAC034 Vitis vinifera VIT_12s0035g02020 I
Ca_18171 Cicer arietinum Ca_18171 I
Cla004630 Citrullus lanatus Cla004630 I
Pm003809 Prunus mume Pm003809 I
30063.m001417 Ricinus communis 30063.m001417 I
cassava17150.m1 Manihot esculenta cassava17150.m1 I
cassava23178.valid.m1 Manihot esculenta cassava23178.valid.m1 I
Cucsa.260400 Cucumis sativus Cucsa.260400 I
mgf015326m Mimulus guttatus mgf015326m I
Aquca_014_00018 Aquilegia coerulea Aquca_014_00018 I
Bostr.0556s0069 Boechera stricta Bostr.0556s0069 I
Cagra.0534s0046 Capsella grandiflora Cagra.0534s0046 I
Carubv10017334m.g Capsella rubella Carubv10017334m.g I
Ciclev10001346m.g Citrus clementina Ciclev10001346m.g I
Ciclev10001401m.g Citrus clementina Ciclev10001401m.g I
Eucgr.G00054 Eucalyptus grandis Eucgr.G00054 I
gene29260-v1.0-hybrid Fragaria vesca gene29260-v1.0-hybrid I
Gorai.010G142400 Gossypium raimondii Gorai.010G142400 I
Gorai.011G090000 Gossypium raimondii Gorai.011G090000 I
Lus10003367.g Linum usitatissimum Lus10003367.g I
Lus10008419.g Linum usitatissimum Lus10008419.g I
Lus10008420.g Linum usitatissimum Lus10008420.g I
Lus10008897.g Linum usitatissimum Lus10008897.g I
Lus10023208.g Linum usitatissimum Lus10023208.g I
MDP0000189394 Malus domestica MDP0000189394 I
orange1.1g016095m.g Citrus sinensis orange1.1g016095m.g I
orange1.1g046996m.g Citrus sinensis orange1.1g046996m.g I
Pavir.Ea03596 Panicum virgatum Pavir.Ea03596 I
Pavir.J00477 Panicum virgatum Pavir.J00477 I
Pavir.J03312 Panicum virgatum Pavir.J03312 I
Pavir.J07491 Panicum virgatum Pavir.J07491 I
SapurV1A.0198s0420 Salix purpurea SapurV1A.0198s0420 I
SapurV1A.0847s0050 Salix purpurea SapurV1A.0847s0050 I
Thhalv10004330m.g Eutrema salsugineum Thhalv10004330m.g I
PK24240.1 Cannabis sativa PK24240.1 I
chr4.CM0525.60.nd Lotus japonicus chr4.CM0525.60.nd I
PDK_20s1594511g001 Phoenix dactylifera PDK_20s1594511g001 I
GSMUA_Achr11G26450_001 Musa acuminata GSMUA_Achr11G26450_001 N
Si013995m.g Setaria italica Si013995m.g N
Traes_1DL_D79FDE483 Triticum aestivum Traes_1DL_D79FDE483 N
Lus10003366.g Linum usitatissimum Lus10003366.g N
Pavir.Fa02204 Panicum virgatum Pavir.Fa02204 N