ref-2 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00004335 T131569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ref-2
M00621_2.00		 Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.757 0.739
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.757 0.739
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.757 0.739
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.757 0.739
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00621_2.00 C2H2 ZF 51 78
M00621_2.00 C2H2 ZF 84 106
M00621_2.00 C2H2 ZF 112 136
M00621_2.00 C2H2 ZF 142 166

DNA Binding Domains

Protein ID Domain From To Sequence
C47C12.3a.1 C2H2 ZF 106 133
C47C12.3a.1 C2H2 ZF 139 161
C47C12.3a.1 C2H2 ZF 167 191
C47C12.3a.1 C2H2 ZF 197 221
C47C12.3a.2 C2H2 ZF 106 133
C47C12.3a.2 C2H2 ZF 139 161
C47C12.3a.2 C2H2 ZF 167 191
C47C12.3a.2 C2H2 ZF 197 221
C47C12.3b C2H2 ZF 119 146
C47C12.3b C2H2 ZF 152 174
C47C12.3b C2H2 ZF 180 204
C47C12.3b C2H2 ZF 210 234

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE00505 Caenorhabditis remanei CRE00505 I 0.807
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.781
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.779
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.769
ENSPSIG00000011885 Pelodiscus sinensis ENSPSIG00000011885 I 0.767
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.767
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.766
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.764
CJA16978 Caenorhabditis japonica CJA16978 I 0.763
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.762
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.762
zic6 Danio rerio ENSDARG00000071496 I 0.762
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.762
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.762
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.761
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.758
AGAP001291 Anopheles gambiae AGAP001291 I 0.757
opa Drosophila melanogaster FBgn0003002 D 0.757
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.757
GF18915 Drosophila ananassae FBgn0095929 I 0.757
GG12590 Drosophila erecta FBgn0104878 I 0.757
GH23039 Drosophila grimshawi FBgn0130496 I 0.757
GI10245 Drosophila mojavensis FBgn0133010 I 0.757
GL21621 Drosophila persimilis FBgn0159214 I 0.757
GM10780 Drosophila sechellia FBgn0165726 I 0.757
GD19752 Drosophila simulans FBgn0191241 I 0.757
GJ11051 Drosophila virilis FBgn0198317 I 0.757
GK13239 Drosophila willistoni FBgn0215248 I 0.757
KGM_22387 Danaus plexippus KGM_22387 I 0.757
NV11451 Nasonia vitripennis NV11451 I 0.757
MDOA000052 Musca domestica MDOA000052 I 0.757
BXY_1106000 Bursaphelenchus xylophilus BXY_1106000 I 0.757
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.756
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.756