CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
nLs.2.1.2.g02824
(
Litomosoides sigmodontis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nLs.2.1.2.g02824
T155326_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ref-2
M00621_2.00
Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG
PBM
Narasimhan et al.(2015)
pTH9089
0.764
0.747
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.758
0.791
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.758
0.791
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.758
0.791
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.758
0.791
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.758
0.791
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t02824-RA
C2H2 ZF
253
280
HVCQWKDCSRRGKIFKAKYKLVNHIRVH
nLs.2.1.2.t02824-RA
C2H2 ZF
286
308
FPCTMCSKVFARSENLKIHQRTH
nLs.2.1.2.t02824-RA
C2H2 ZF
314
338
FTCTHPGCDRKFANSSDRKKHMHVH
nLs.2.1.2.t02824-RA
C2H2 ZF
344
367
YECKINGCRKSYTHPSSLRKHLKF
Links
Other
C2H2 ZF
family TFs
Other
Litomosoides sigmodontis
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCLT_0000586501
Thelazia callipaeda
TCLT_0000586501
I
0.815
WBGene00239980
Onchocerca volvulus
WBGene00239980
I
0.810
ENSAMXG00000012318
Astyanax mexicanus
ENSAMXG00000012318
I
0.785
zic6
Danio rerio
ENSDARG00000071496
I
0.785
ENSGMOG00000004419
Gadus morhua
ENSGMOG00000004419
I
0.785
ENSONIG00000002719
Oreochromis niloticus
ENSONIG00000002719
I
0.785
NEMVEDRAFT_v1g25267
Nematostella vectensis
NEMVEDRAFT_v1g25267
I
0.784
ANCCEY_00370
Ancylostoma ceylanicum
ANCCEY_00370
I
0.783
ENSSHAG00000015025
Sarcophilus harrisii
ENSSHAG00000015025
I
0.782
XP_002159358.1
Hydra magnipapillata
XP_002159358.1
I
0.781
ENSDORG00000012706
Dipodomys ordii
ENSDORG00000012706
I
0.778
ZIC5
Oryctolagus cuniculus
ENSOCUG00000026498
I
0.778
ZIC5
Ochotona princeps
ENSOPRG00000007526
I
0.778
ENSPPYG00000005471
Pongo abelii
ENSPPYG00000005471
I
0.778
ZIC5
Sus scrofa
ENSSSCG00000009521
I
0.778
ENSMMUP00000019456
Macaca fascicularis
ENSMMUP00000019456
I
0.778
nRc.2.0.1.g22468
Romanomermis culicivorax
nRc.2.0.1.g22468
I
0.778
CGI_10016117
Crassostrea gigas
CGI_10016117
I
0.775
ENSACAG00000003701
Anolis carolinensis
ENSACAG00000003701
I
0.775
ENSOANG00000012152
Ornithorhynchus anatinus
ENSOANG00000012152
I
0.775
Cmyd_10016551
Chelonia mydas
Cmyd_10016551
I
0.775
Ogr17257
Ophisaurus gracilis
Ogr17257
I
0.775
ENSPFOG00000012980
Poecilia formosa
ENSPFOG00000012980
I
0.773
Pvit_01334
Pogona vitticeps
Pvit_01334
I
0.773
Sakowv30026420m.g
Saccoglossus kowalevskii
Sakowv30026420m.g
I
0.773
CGI_10016115
Crassostrea gigas
CGI_10016115
I
0.772
AGAP001291
Anopheles gambiae
AGAP001291
I
0.770
DAPPUDRAFT_290567
Daphnia pulex
DAPPUDRAFT_290567
I
0.770
ENSAMXG00000000658
Astyanax mexicanus
ENSAMXG00000000658
I
0.770
ZIC1
Monodelphis domestica
ENSMODG00000021251
I
0.770
KGM_22387
Danaus plexippus
KGM_22387
I
0.770
TC010234
Tribolium castaneum
TC010234
I
0.770
RSKR_0001155900
Rhabditophanes kr3021
RSKR_0001155900
I
0.770
csin109208
Clonorchis sinensis
csin109208
I
0.768
PTRK_0000799900
Parastrongyloides trichosuri
PTRK_0000799900
I
0.768
T265_00048
Opisthorchis viverrini
T265_00048
I
0.768
GB54250
Apis mellifera
GB54250
I
0.767
NV11451
Nasonia vitripennis
NV11451
I
0.767
tetur11g00650
Tetranychus urticae
tetur11g00650
I
0.766
NEMVEDRAFT_v1g121215
Nematostella vectensis
NEMVEDRAFT_v1g121215
I
0.765
XP_002153782.1
Hydra magnipapillata
XP_002153782.1
I
0.765
CRE00505
Caenorhabditis remanei
CRE00505
I
0.764
ref-2
Caenorhabditis elegans
WBGene00004335
D
0.764
SMU15031708
Schmidtea mediterranea
SMU15031708
I
0.759
SPAL_0001746600
Strongyloides papillosus
SPAL_0001746600
I
0.759
SVE_0347600
Strongyloides venezuelensis
SVE_0347600
I
0.759
opa
Drosophila melanogaster
FBgn0003002
D
0.758
GA10924
Drosophila pseudoobscura
FBgn0070980
I
0.758
GF18915
Drosophila ananassae
FBgn0095929
I
0.758
GG12590
Drosophila erecta
FBgn0104878
I
0.758
GH23039
Drosophila grimshawi
FBgn0130496
I
0.758
GI10245
Drosophila mojavensis
FBgn0133010
I
0.758
GL21621
Drosophila persimilis
FBgn0159214
I
0.758
GM10780
Drosophila sechellia
FBgn0165726
I
0.758
GD19752
Drosophila simulans
FBgn0191241
I
0.758
GJ11051
Drosophila virilis
FBgn0198317
I
0.758
GK13239
Drosophila willistoni
FBgn0215248
I
0.758
MDOA000052
Musca domestica
MDOA000052
I
0.758
TMUE_s0101002100
Trichuris muris
TMUE_s0101002100
I
0.758
SMU15033928
Schmidtea mediterranea
SMU15033928
I
0.756
SSTP_0000201100
Strongyloides stercoralis
SSTP_0000201100
I
0.756