CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_01334
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_01334
T136872_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.780
0.870
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.780
0.870
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.780
0.870
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.780
0.870
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.780
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_01334
C2H2 ZF
21
48
HICYWEDCPREGKSFKAKYKLVNHIRVH
Pvit_01334
C2H2 ZF
54
78
FPCPFPGCGKIFARSENLKIHKRTH
Pvit_01334
C2H2 ZF
84
108
FKCEFEGCDRRFANSSDRKKHMHVH
Pvit_01334
C2H2 ZF
114
136
YICKVCDKSYTHPSSLRKHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZIC1
Monodelphis domestica
ENSMODG00000021251
I
0.807
ENSPFOG00000012980
Poecilia formosa
ENSPFOG00000012980
I
0.802
CGI_10016115
Crassostrea gigas
CGI_10016115
I
0.797
Sakowv30026420m.g
Saccoglossus kowalevskii
Sakowv30026420m.g
I
0.797
XP_002153782.1
Hydra magnipapillata
XP_002153782.1
I
0.797
ENSSHAG00000015025
Sarcophilus harrisii
ENSSHAG00000015025
I
0.795
nRc.2.0.1.g22468
Romanomermis culicivorax
nRc.2.0.1.g22468
I
0.795
MDOA000052
Musca domestica
MDOA000052
I
0.794
DAPPUDRAFT_290567
Daphnia pulex
DAPPUDRAFT_290567
I
0.792
ENSGMOG00000004419
Gadus morhua
ENSGMOG00000004419
I
0.792
KGM_22387
Danaus plexippus
KGM_22387
I
0.792
NEMVEDRAFT_v1g25267
Nematostella vectensis
NEMVEDRAFT_v1g25267
I
0.792
TC010234
Tribolium castaneum
TC010234
I
0.792
ENSAMXG00000012318
Astyanax mexicanus
ENSAMXG00000012318
I
0.790
zic6
Danio rerio
ENSDARG00000071496
I
0.790
ENSONIG00000002719
Oreochromis niloticus
ENSONIG00000002719
I
0.790
AGAP001291
Anopheles gambiae
AGAP001291
I
0.789
GB54250
Apis mellifera
GB54250
I
0.789
NV11451
Nasonia vitripennis
NV11451
I
0.789
WBGene00239980
Onchocerca volvulus
WBGene00239980
I
0.785
TCLT_0000586501
Thelazia callipaeda
TCLT_0000586501
I
0.785
ENSDORG00000012706
Dipodomys ordii
ENSDORG00000012706
I
0.783
ZIC5
Oryctolagus cuniculus
ENSOCUG00000026498
I
0.783
ZIC5
Ochotona princeps
ENSOPRG00000007526
I
0.783
ENSPPYG00000005471
Pongo abelii
ENSPPYG00000005471
I
0.783
ZIC5
Sus scrofa
ENSSSCG00000009521
I
0.783
tetur11g00650
Tetranychus urticae
tetur11g00650
I
0.783
Cmyd_10016551
Chelonia mydas
Cmyd_10016551
I
0.783
ENSMMUP00000019456
Macaca fascicularis
ENSMMUP00000019456
I
0.783
CGI_10016117
Crassostrea gigas
CGI_10016117
I
0.780
ENSACAG00000003701
Anolis carolinensis
ENSACAG00000003701
I
0.780
ENSOANG00000012152
Ornithorhynchus anatinus
ENSOANG00000012152
I
0.780
opa
Drosophila melanogaster
FBgn0003002
D
0.780
GA10924
Drosophila pseudoobscura
FBgn0070980
I
0.780
GF18915
Drosophila ananassae
FBgn0095929
I
0.780
GG12590
Drosophila erecta
FBgn0104878
I
0.780
GH23039
Drosophila grimshawi
FBgn0130496
I
0.780
GI10245
Drosophila mojavensis
FBgn0133010
I
0.780
GL21621
Drosophila persimilis
FBgn0159214
I
0.780
GM10780
Drosophila sechellia
FBgn0165726
I
0.780
GD19752
Drosophila simulans
FBgn0191241
I
0.780
GJ11051
Drosophila virilis
FBgn0198317
I
0.780
GK13239
Drosophila willistoni
FBgn0215248
I
0.780
Ogr17257
Ophisaurus gracilis
Ogr17257
I
0.780
XP_002159358.1
Hydra magnipapillata
XP_002159358.1
I
0.780
csin109208
Clonorchis sinensis
csin109208
I
0.780
T265_00048
Opisthorchis viverrini
T265_00048
I
0.780
SMU15031708
Schmidtea mediterranea
SMU15031708
I
0.778
SNAPOd2T00002718001
Oikopleura dioica
SNAPOd2T00002718001
I
0.777
SPAL_0001746600
Strongyloides papillosus
SPAL_0001746600
I
0.777
SSTP_0000201100
Strongyloides stercoralis
SSTP_0000201100
I
0.777
SVE_0347600
Strongyloides venezuelensis
SVE_0347600
I
0.777
NEMVEDRAFT_v1g121215
Nematostella vectensis
NEMVEDRAFT_v1g121215
I
0.773
nLs.2.1.2.g02824
Litomosoides sigmodontis
nLs.2.1.2.g02824
I
0.773
TMUE_s0101002100
Trichuris muris
TMUE_s0101002100
I
0.772
SMU15033928
Schmidtea mediterranea
SMU15033928
I
0.770
ENSAMXG00000000658
Astyanax mexicanus
ENSAMXG00000000658
I
0.766
macho1
Ciona intestinalis
ENSCING00000007968
I
0.766
ENSCSAVG00000001907
Ciona savignyi
ENSCSAVG00000001907
I
0.766
CJA16978
Caenorhabditis japonica
CJA16978
I
0.762
ANCCEY_00370
Ancylostoma ceylanicum
ANCCEY_00370
I
0.761
HelroG77001
Helobdella robusta
HelroG77001
N
0.758