NEMVEDRAFT_v1g25267 (Nematostella vectensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 NEMVEDRAFT_v1g25267 T124244_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.766 0.880
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.766 0.880
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.766 0.880
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.766 0.880
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.766 0.880
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35943 C2H2 ZF 61 88
EDO35943 C2H2 ZF 94 118
EDO35943 C2H2 ZF 124 148
EDO35943 C2H2 ZF 154 178

Links

Other C2H2 ZF family TFs
Other Nematostella vectensis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.800
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.797
zic6 Danio rerio ENSDARG00000071496 I 0.797
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.797
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.792
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.792
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.792
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.790
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.790
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.788
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.787
csin109208 Clonorchis sinensis csin109208 I 0.787
T265_00048 Opisthorchis viverrini T265_00048 I 0.787
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.786
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.786
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.786
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.786
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.785
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.784
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.783
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.783
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.783
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.783
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.783
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.783
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.783
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.780
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.780
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.778
KGM_22387 Danaus plexippus KGM_22387 I 0.778
TC010234 Tribolium castaneum TC010234 I 0.778
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.778
AGAP001291 Anopheles gambiae AGAP001291 I 0.775
GB54250 Apis mellifera GB54250 I 0.775
NV11451 Nasonia vitripennis NV11451 I 0.775
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.772
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.772
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.771
MDOA000052 Musca domestica MDOA000052 I 0.768
opa Drosophila melanogaster FBgn0003002 D 0.766
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.766
GF18915 Drosophila ananassae FBgn0095929 I 0.766
GG12590 Drosophila erecta FBgn0104878 I 0.766
GH23039 Drosophila grimshawi FBgn0130496 I 0.766
GI10245 Drosophila mojavensis FBgn0133010 I 0.766
GL21621 Drosophila persimilis FBgn0159214 I 0.766
GM10780 Drosophila sechellia FBgn0165726 I 0.766
GD19752 Drosophila simulans FBgn0191241 I 0.766
GJ11051 Drosophila virilis FBgn0198317 I 0.766
GK13239 Drosophila willistoni FBgn0215248 I 0.766
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.765
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.765
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.765
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.763
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.763
CRE00505 Caenorhabditis remanei CRE00505 I 0.761
macho1 Ciona intestinalis ENSCING00000007968 I 0.761
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.761
ref-2 Caenorhabditis elegans WBGene00004335 D 0.761
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.760
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.760
HelroG77001 Helobdella robusta HelroG77001 N 0.760
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.760
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.760