Alligator_sinensis_CCG003245.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003245.1 T133008_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB7A
M02914_2.00 		Homo sapiens
NRCGACCACCNV
BNGGTGGTCGYN		 SELEX
Jolma et al.(2013)
ZBTB7A_1 		0.827 0.989
ZBTB7A
M04579_2.00 		Homo sapiens
DCGACCMCCVH
DBGGKGGTCGH		 SELEX
Yin et al.(2017)
ZBTB7A_eDBD_HT-SELEX 		0.827 0.989
ZBTB7A
M08095_2.00 		Homo sapiens
NBSRCTTCCGGNN
NNCCGGAAGYSVN		 ChIP-seq
Mathelier et al.(2014)
MA0750.2 		0.827 0.989
ZBTB7A
M07937_2.00 		Homo sapiens
SNVVGMCCCYNNSBS
SVSNNRGGGKCBBNS		 ChIP-seq
Gerstein et al.(2012)
K562_ZBTB7A_HudsonAlpha 		0.827 0.989
ZBTB7A
M08926_2.00 		Homo sapiens
VVGMCCCYB
VRGGGKCBB		 Misc
Kulakovskiy et al.(2013)
ZBT7A_HUMAN.H11MO.0.A 		0.827 0.989
Zbtb7a
M08991_2.00 		Mus musculus
VVGMCCCYB
VRGGGKCBB		 Misc
Kulakovskiy et al.(2013)
ZBT7A_MOUSE.H11MO.0.B 		0.827 0.989
ZBTB7A
M10273_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRF_Q2 		0.827 0.989
ZBTB7A
M10274_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRF_Q3 		0.827 0.989
ZBTB7A
M10275_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRF_Q6 		0.827 0.989
ZBTB7A
M10276_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZBTB7A_02 		0.827 0.989
ZBTB7A
M10277_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZBTB7A_03 		0.827 0.989
ZBTB7A
M04580_2.00 		Homo sapiens
DCGACCACCNH
DNGGTGGTCGH		 SELEX
Yin et al.(2017)
ZBTB7A_eDBD_Methyl-HT-SELEX 		0.827 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003245.1 C2H2 ZF 220 242
Alligator_sinensis_CCG003245.1 C2H2 ZF 248 270
Alligator_sinensis_CCG003245.1 C2H2 ZF 276 298
Alligator_sinensis_CCG003245.1 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF335 Homo sapiens ENSG00000198026 D
Zfp335 Mus musculus ENSMUSG00000039834 D
ZNF335 Myotis lucifugus ENSMLUG00000000282 I
Myotis_brandtii_ZNF335_10013703 Myotis brandtii Myotis_brandtii_ZNF335_10013703 I
ENSBTAP00000053387-D1 Bos grunniens ENSBTAP00000053387-D1 I
ZNF335 Tursiops truncatus ENSTTRG00000012103 I
ENSSTOG00000006323 Ictidomys tridecemlineatus ENSSTOG00000006323 I
Zfp335 Rattus norvegicus ENSRNOG00000017290 I
ZNF335 Pteropus vampyrus ENSPVAG00000000383 I
ZNF335 Pan troglodytes ENSPTRG00000023353 I
ZNF335 Otolemur garnettii ENSOGAG00000015292 I
ZNF335 Oryctolagus cuniculus ENSOCUG00000016059 I
ENSMPUG00000017610 Mustela putorius furo ENSMPUG00000017610 I
ENSAMEG00000012733 Ailuropoda melanoleuca ENSAMEG00000012733 I
ZNF335 Loxodonta africana ENSLAFG00000016142 I
ZNF335 Gorilla gorilla ENSGGOG00000013550 I
ZNF335 Equus caballus ENSECAG00000023647 I
Zfp335 Dipodomys ordii ENSDORG00000007083 I
ENSCSAG00000014693 Chlorocebus sabaeus ENSCSAG00000014693 I
ZNF335 Cavia porcellus ENSCPOG00000000138 I
ZNF335 Callithrix jacchus ENSCJAG00000017215 I
ZNF335 Canis familiaris ENSCAFG00000009882 I
ZNF335 Bos taurus ENSBTAG00000010130 I