Alligator_sinensis_CCG003489.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003489.1 T133028_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003489.1 C2H2 ZF 443 467
Alligator_sinensis_CCG003489.1 C2H2 ZF 473 497
Alligator_sinensis_CCG003489.1 C2H2 ZF 503 525
Alligator_sinensis_CCG003489.1 C2H2 ZF 531 553
Alligator_sinensis_CCG003489.1 C2H2 ZF 561 584

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004703 Oryza indica BGIOSGA004703 I
BGIOSGA004704 Oryza indica BGIOSGA004704 I
BGIOSGA017860 Oryza indica BGIOSGA017860 I
BGIOSGA030346 Oryza indica BGIOSGA030346 I
BRADI2G22230 Brachypodium distachyon BRADI2G22230 I
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I
F775_23182 Aegilops tauschii F775_23182 I
F775_31341 Aegilops tauschii F775_31341 I
GRMZM2G158328 Zea mays GRMZM2G158328 I
GRMZM2G432583 Zea mays GRMZM2G432583 I
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
LPERR05G16170 Leersia perrieri LPERR05G16170 I
LPERR10G04210 Leersia perrieri LPERR10G04210 I
MLOC_57051 Hordeum vulgare MLOC_57051 I
OB01G44140 Oryza brachyantha OB01G44140 I
OB01G44150 Oryza brachyantha OB01G44150 I
OB05G27830 Oryza brachyantha OB05G27830 I
OB05G27850 Oryza brachyantha OB05G27850 I
OBART01G35310 Oryza barthii OBART01G35310 I
OBART01G35350 Oryza barthii OBART01G35350 I
OBART05G20330 Oryza barthii OBART05G20330 I
OBART05G20340 Oryza barthii OBART05G20340 I
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I
OLONG_027124 Oryza longistaminata OLONG_027124 I
OMERI01G32480 Oryza meridionalis OMERI01G32480 I
OMERI01G32490 Oryza meridionalis OMERI01G32490 I
OMERI05G18170 Oryza meridionalis OMERI05G18170 I
OMERI05G18250 Oryza meridionalis OMERI05G18250 I
OMERI05G18260 Oryza meridionalis OMERI05G18260 I
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
ONIVA01G40370 Oryza nivara ONIVA01G40370 I
ONIVA05G21440 Oryza nivara ONIVA05G21440 I
ONIVA05G21460 Oryza nivara ONIVA05G21460 I
OPUNC01G34280 Oryza punctata OPUNC01G34280 I
OPUNC05G17980 Oryza punctata OPUNC05G17980 I
OPUNC05G18000 Oryza punctata OPUNC05G18000 I
OPUNC05G18030 Oryza punctata OPUNC05G18030 I
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I
OS01G0820700 Oryza sativa OS01G0820700 I
OS05G0478400 Oryza sativa OS05G0478400 I
OS05G0478800 Oryza sativa OS05G0478800 I
Sb03g038180 Sorghum bicolor Sb03g038180 I
Si027574m.g Setaria italica Si027574m.g I
Traes_1AL_B24F28600 Triticum aestivum Traes_1AL_B24F28600 I
Traes_1BL_B4AFDB663 Triticum aestivum Traes_1BL_B4AFDB663 I
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
TRIUR3_34396 Triticum urartu TRIUR3_34396 I
Carubv10021899m.g Capsella rubella Carubv10021899m.g I
Pavir.J07662 Panicum virgatum Pavir.J07662 I
Pavir.J18239 Panicum virgatum Pavir.J18239 I
Pavir.J35902 Panicum virgatum Pavir.J35902 I
Pavir.J41073 Panicum virgatum Pavir.J41073 I
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I
BGIOSGA012523 Oryza indica BGIOSGA012523 N
BGIOSGA012525 Oryza indica BGIOSGA012525 N
BGIOSGA017861 Oryza indica BGIOSGA017861 N
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N
F775_02926 Aegilops tauschii F775_02926 N
F775_03183 Aegilops tauschii F775_03183 N
F775_03972 Aegilops tauschii F775_03972 N
F775_04954 Aegilops tauschii F775_04954 N
F775_31089 Aegilops tauschii F775_31089 N
GRMZM2G030272 Zea mays GRMZM2G030272 N
GRMZM2G400559 Zea mays GRMZM2G400559 N
LPERR03G13630 Leersia perrieri LPERR03G13630 N
LPERR05G16160 Leersia perrieri LPERR05G16160 N
LPERR11G00940 Leersia perrieri LPERR11G00940 N
MLOC_11088 Hordeum vulgare MLOC_11088 N
MLOC_3853 Hordeum vulgare MLOC_3853 N
MLOC_57764 Hordeum vulgare MLOC_57764 N
OB03G25300 Oryza brachyantha OB03G25300 N
OB05G27840 Oryza brachyantha OB05G27840 N
OB11G10730 Oryza brachyantha OB11G10730 N
OB11G10740 Oryza brachyantha OB11G10740 N
OBART03G15470 Oryza barthii OBART03G15470 N
OBART05G20320 Oryza barthii OBART05G20320 N
OBART10G05920 Oryza barthii OBART10G05920 N
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N
OLONG_001744 Oryza longistaminata OLONG_001744 N
OLONG_007113 Oryza longistaminata OLONG_007113 N
OLONG_022888 Oryza longistaminata OLONG_022888 N
OMERI05G18240 Oryza meridionalis OMERI05G18240 N
OMERI10G04260 Oryza meridionalis OMERI10G04260 N
OMERI11G01480 Oryza meridionalis OMERI11G01480 N
ONIVA03G16490 Oryza nivara ONIVA03G16490 N
ONIVA05G21450 Oryza nivara ONIVA05G21450 N
OPUNC01G34270 Oryza punctata OPUNC01G34270 N
OPUNC03G15030 Oryza punctata OPUNC03G15030 N
OPUNC05G17990 Oryza punctata OPUNC05G17990 N
OPUNC10G05310 Oryza punctata OPUNC10G05310 N
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N
ORGLA05G0177300 Oryza glaberrima ORGLA05G0177300 N
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N
ORUFI05G21590 Oryza rufipogon ORUFI05G21590 N
OS03G0321700 Oryza sativa OS03G0321700 N
OS05G0478700 Oryza sativa OS05G0478700 N
Sb01g036870 Sorghum bicolor Sb01g036870 N
Sb05g001220 Sorghum bicolor Sb05g001220 N
Sb09g023500 Sorghum bicolor Sb09g023500 N
Si022933m.g Setaria italica Si022933m.g N
Si039519m.g Setaria italica Si039519m.g N
Traes_1AL_309623B48 Triticum aestivum Traes_1AL_309623B48 N
Traes_1BL_46340D685 Triticum aestivum Traes_1BL_46340D685 N
Traes_1DL_DFE1721E0 Triticum aestivum Traes_1DL_DFE1721E0 N
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N
TRIUR3_06231 Triticum urartu TRIUR3_06231 N
TRIUR3_16097 Triticum urartu TRIUR3_16097 N
TRIUR3_22129 Triticum urartu TRIUR3_22129 N
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N
Pavir.J16737 Panicum virgatum Pavir.J16737 N