Alligator_sinensis_CCG005558.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005558.1 T133137_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF282
M02904_2.00 		Homo sapiens
BTTTCCCMYAACACKNN
NNMGTGTTRKGGGAAAV		 SELEX
Jolma et al.(2013)
ZNF282_1 		0.762 0.809
ZNF282
M04541_2.00 		Homo sapiens
NHTCCCMYNACMCK
MGKGTNRKGGGADN		 SELEX
Yin et al.(2017)
ZNF282_eDBD_HT-SELEX 		0.762 0.809
ZNF282
M05849_2.00 		Homo sapiens
HMTCCCRCMCC
GGKGYGGGAKD		 SMiLE-seq
Isakova et al.(2017)
ZNF282 		0.762 0.809
ZNF282
M07626_2.00 		Homo sapiens
CTCCCS
SGGGAG		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF282.RCADE.ReprocessedData 		0.762 0.809
ZNF282
M04542_2.00 		Homo sapiens
HWTCCCMYVACMCN
NGKGTBRKGGGAWD		 SELEX
Yin et al.(2017)
ZNF282_eDBD_Methyl-HT-SELEX 		0.762 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005558.1 C2H2 ZF 475 497
Alligator_sinensis_CCG005558.1 C2H2 ZF 503 525
Alligator_sinensis_CCG005558.1 C2H2 ZF 531 553
Alligator_sinensis_CCG005558.1 C2H2 ZF 559 581
Alligator_sinensis_CCG005558.1 C2H2 ZF 587 609

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MGYG_04684 Microsporum gypseum MGYG_04684 N 0.000
AB10540.1 Alternaria brassicicola AB10540.1 N 0.000
AB08131.1 Alternaria brassicicola AB08131.1 N 0.000
fgenesh1_pg.C_scaffold_14000107 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_14000107 N 0.000
TRV_02827 Trichophyton verrucosum TRV_02827 N 0.000
TESG_04140 Trichophyton tonsurans TESG_04140 N 0.000
TEQG_05179 Trichophyton equinum TEQG_05179 N 0.000
SNOG_03792 Phaeosphaeria nodorum SNOG_03792 N 0.000
SETTUDRAFT_182079 Setosphaeria turcica SETTUDRAFT_182079 N 0.000
PTT_14570 Pyrenophora teres PTT_14570 N 0.000
PTRG_08751 Pyrenophora triticirepentis PTRG_08751 N 0.000
PABG_01478 Paracoccidioides brasiliensis PABG_01478 N 0.000
PAAG_00749 Paracoccidioides sp lutzii PAAG_00749 N 0.000
MPH_08084 Macrophomina phaseolina MPH_08084 N 0.000
SNOG_03792 Stagonospora nodorum SNOG_03792 N 0.000
M7I_2968 Glarea lozoyensis M7I_2968 N 0.000
LEMA_P063520.1 Leptosphaeria maculans LEMA_P063520.1 N 0.000
HCBG_00082 Histoplasma capsulatum HCBG_00082 N 0.000
H105_06234 Trichophyton soudanense H105_06234 N 0.000
H102_06195 Trichophyton rubrum H102_06195 N 0.000
H101_03515 Trichophyton interdigitale H101_03515 N 0.000
COCVIDRAFT_33489 Bipolaris victoriae COCVIDRAFT_33489 N 0.000
COCSADRAFT_147534 Bipolaris sorokiniana COCSADRAFT_147534 N 0.000
COCMIDRAFT_26521 Bipolaris oryzae COCMIDRAFT_26521 N 0.000
COCCADRAFT_22008 Bipolaris zeicola COCCADRAFT_22008 N 0.000
COCC4DRAFT_194294 Bipolaris maydis COCC4DRAFT_194294 N 0.000
ARB_01056 Arthroderma benhamiae ARB_01056 N 0.000