Alligator_sinensis_CCG005558.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005558.1 T133137_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF282
M02904_2.00 		Homo sapiens
BTTTCCCMYAACACKNN
NNMGTGTTRKGGGAAAV		 SELEX
Jolma et al.(2013)
ZNF282_1 		0.762 0.809
ZNF282
M04541_2.00 		Homo sapiens
NHTCCCMYNACMCK
MGKGTNRKGGGADN		 SELEX
Yin et al.(2017)
ZNF282_eDBD_HT-SELEX 		0.762 0.809
ZNF282
M05849_2.00 		Homo sapiens
HMTCCCRCMCC
GGKGYGGGAKD		 SMiLE-seq
Isakova et al.(2017)
ZNF282 		0.762 0.809
ZNF282
M07626_2.00 		Homo sapiens
CTCCCS
SGGGAG		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF282.RCADE.ReprocessedData 		0.762 0.809
ZNF282
M04542_2.00 		Homo sapiens
HWTCCCMYVACMCN
NGKGTBRKGGGAWD		 SELEX
Yin et al.(2017)
ZNF282_eDBD_Methyl-HT-SELEX 		0.762 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005558.1 C2H2 ZF 475 497
Alligator_sinensis_CCG005558.1 C2H2 ZF 503 525
Alligator_sinensis_CCG005558.1 C2H2 ZF 531 553
Alligator_sinensis_CCG005558.1 C2H2 ZF 559 581
Alligator_sinensis_CCG005558.1 C2H2 ZF 587 609

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000001973 Ficedula albicollis ENSFALG00000001973 N 0.772
ZNF282 Bos taurus ENSBTAG00000020448 I 0.762
ENSCSAG00000007010 Chlorocebus sabaeus ENSCSAG00000007010 I 0.762
ZNF282 Dasypus novemcinctus ENSDNOG00000008361 I 0.762
ZNF282 Homo sapiens ENSG00000170265 D 0.762
ZNF398 Gorilla gorilla ENSGGOG00000005812 I 0.762
ENSMICG00000016620 Microcebus murinus ENSMICG00000016620 I 0.762
ZNF282 Myotis lucifugus ENSMLUG00000010622 I 0.762
ZNF282 Macaca mulatta ENSMMUG00000000767 I 0.762
ENSMPUG00000006666 Mustela putorius furo ENSMPUG00000006666 I 0.762
Zfp282 Mus musculus ENSMUSG00000025821 I 0.762
ZNF282 Oryctolagus cuniculus ENSOCUG00000008423 I 0.762
ZNF282 Otolemur garnettii ENSOGAG00000030129 I 0.762
ZNF282 Ochotona princeps ENSOPRG00000010540 I 0.762
ENSPANG00000008719 Papio anubis ENSPANG00000008719 I 0.762
ENSPPYG00000018151 Pongo abelii ENSPPYG00000018151 I 0.762
ZNF282 Pan troglodytes ENSPTRG00000019841 I 0.762
Zfp282 Rattus norvegicus ENSRNOG00000026981 I 0.762
ENSSTOG00000021295 Ictidomys tridecemlineatus ENSSTOG00000021295 I 0.762
ZNF282 Tupaia belangeri ENSTBEG00000000091 I 0.762
ZNF282 Tursiops truncatus ENSTTRG00000015685 I 0.762
Myotis_brandtii_ZNF282_10025638 Myotis brandtii Myotis_brandtii_ZNF282_10025638 I 0.762