Alligator_sinensis_CCG012513.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG012513.1 T133295_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.819 0.971
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.819 0.971
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.819 0.971
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.819 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG012513.1 C2H2 ZF 593 615
Alligator_sinensis_CCG012513.1 C2H2 ZF 621 643
Alligator_sinensis_CCG012513.1 C2H2 ZF 649 671
Alligator_sinensis_CCG012513.1 C2H2 ZF 677 699
Alligator_sinensis_CCG012513.1 C2H2 ZF 705 727
Alligator_sinensis_CCG012513.1 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OIDMADRAFT_100216 Oidiodendron maius OIDMADRAFT_100216 N 0.000
PV09_02242 Verruconis gallopava PV09_02242 N 0.000
SBOR_0532 Sclerotinia borealis SBOR_0532 N 0.000