Gfo_R010882 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R010882 T135817_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.825 0.993
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.825 0.993
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010882 C2H2 ZF 147 169
Gfo_R010882 C2H2 ZF 211 232
Gfo_R010882 C2H2 ZF 238 260
Gfo_R010882 C2H2 ZF 268 291
Gfo_R010882 C2H2 ZF 297 319
Gfo_R010882 C2H2 ZF 351 373

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PATZ1 Homo sapiens ENSG00000100105 D 0.825
Aan_R008287 Calypte anna Aan_R008287 I 0.827
PATZ1 Ornithorhynchus anatinus ENSOANG00000014654 I 0.825
PATZ1 Otolemur garnettii ENSOGAG00000027905 I 0.825
ENSPPYG00000011732 Pongo abelii ENSPPYG00000011732 I 0.825
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I 0.827
ENSPSIG00000016553 Pelodiscus sinensis ENSPSIG00000016553 I 0.827
PATZ1 Pan troglodytes ENSPTRG00000014268 I 0.825
PATZ1 Pteropus vampyrus ENSPVAG00000001749 I 0.825
ENSSTOG00000020707 Ictidomys tridecemlineatus ENSSTOG00000020707 I 0.825
PATZ1 Tursiops truncatus ENSTTRG00000010279 I 0.825
ENSNLEG00000004385 Nomascus leucogenys ENSNLEG00000004385 I 0.825
Afo_R009044 Aptenodytes forsteri Afo_R009044 I 0.827
Brh_R010628 Buceros rhinoceros Brh_R010628 I 0.827
ENSP00000266269-D1 Bos grunniens ENSP00000266269-D1 I 0.825
ENSP00000266269 Macaca fascicularis ENSP00000266269 I 0.825
Myotis_brandtii_PATZ1_10027570 Myotis brandtii Myotis_brandtii_PATZ1_10027570 I 0.825
Pvit_03702 Pogona vitticeps Pvit_03702 I 0.827
Tal_R008892 Tyto alba Tal_R008892 I 0.827
ENSLACG00000016839 Latimeria chalumnae ENSLACG00000016839 I 0.791
ENSAPLG00000003934 Anas platyrhynchos ENSAPLG00000003934 I 0.827
PATZ1 Bos taurus ENSBTAG00000005478 I 0.825
PATZ1 Canis familiaris ENSCAFG00000013087 I 0.825
PATZ1 Cavia porcellus ENSCPOG00000010787 I 0.825
PATZ1 Dasypus novemcinctus ENSDNOG00000003183 I 0.825
ENSFALG00000007450 Ficedula albicollis ENSFALG00000007450 I 0.827
PATZ1 Gallus gallus ENSGALG00000006934 I 0.825
PATZ1 Gorilla gorilla ENSGGOG00000017171 I 0.825
ENSAMEG00000007074 Ailuropoda melanoleuca ENSAMEG00000007074 I 0.825
PATZ1 Loxodonta africana ENSLAFG00000002317 I 0.802
ENSMEUG00000016293 Macropus eugenii ENSMEUG00000016293 I 0.787
PATZ1 Meleagris gallopavo ENSMGAG00000008439 I 0.825
PATZ1 Microcebus murinus ENSMICG00000005430 I 0.825
PATZ1 Myotis lucifugus ENSMLUG00000009942 I 0.825
PATZ1 Macaca mulatta ENSMMUG00000013911 I 0.825
Patz1 Mus musculus ENSMUSG00000020453 I 0.825