fgenesh1_pg.C_chr_7.1000062 (Pichia stipitis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.C_chr_7.1000062 T138975_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.774 0.913
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_chr_7.1000062 C2H2 ZF 768 791
fgenesh1_pg.C_chr_7.1000062 C2H2 ZF 797 819

Links

Other C2H2 ZF family TFs
Other Pichia stipitis TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC03G30420 Oryza punctata OPUNC03G30420 N 0.000
chr4.CM0100.130.nc Lotus japonicus chr4.CM0100.130.nc N 0.000
Pavir.J00664 Panicum virgatum Pavir.J00664 N 0.000
Pavir.Ia00665 Panicum virgatum Pavir.Ia00665 N 0.000
gene27406-v1.0-hybrid Fragaria vesca gene27406-v1.0-hybrid N 0.000
evm.TU.supercontig_20.16 Carica papaya evm.TU.supercontig_20.16 N 0.000
Pm022161 Prunus mume Pm022161 N 0.000
Ca_05292 Cicer arietinum Ca_05292 N 0.000
Si036747m.g Setaria italica Si036747m.g N 0.000
Sb01g008950 Sorghum bicolor Sb01g008950 N 0.000
PRUPE_ppa023830mg Prunus persica PRUPE_ppa023830mg N 0.000
GATA19 Oryza sativa OS03G0734900 N 0.000
ORUFI03G34610 Oryza rufipogon ORUFI03G34610 N 0.000
ORGLA03G0301600 Oryza glaberrima ORGLA03G0301600 N 0.000
GATA19 Oryza indica BGIOSGA009856 N 0.000
ONIVA03G34920 Oryza nivara ONIVA03G34920 N 0.000
OMERI03G29830 Oryza meridionalis OMERI03G29830 N 0.000
OLONG_026796 Oryza longistaminata OLONG_026796 N 0.000
OGLUM03G32890 Oryza glumaepatula OGLUM03G32890 N 0.000
OBART03G33220 Oryza barthii OBART03G33220 N 0.000
OB03G40300 Oryza brachyantha OB03G40300 N 0.000
GSMUA_Achr7G01650_001 Musa acuminata GSMUA_Achr7G01650_001 N 0.000
GSMUA_Achr6G04510_001 Musa acuminata GSMUA_Achr6G04510_001 N 0.000
GRMZM2G065896 Zea mays GRMZM2G065896 N 0.000
GLYMA08G07170 Glycine max GLYMA08G07170 N 0.000
GLYMA07G30140 Glycine max GLYMA07G30140 N 0.000
BRADI1G09550 Brachypodium distachyon BRADI1G09550 N 0.000