Ocbimv22039583m.g (Octopus bimaculoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ocbimv22039583m.g T142147_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.792 0.842
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.792 0.842
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.792 0.842
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.792 0.842
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.778 0.816
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.778 0.816
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.778 0.816
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.774 0.860
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.774 0.860
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.774 0.860
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.774 0.860
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.764 0.816
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.764 0.816
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.764 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22039583m.p C2H2 ZF 122 144
Ocbimv22039583m.p C2H2 ZF 153 175
Ocbimv22039583m.p C2H2 ZF 179 201
Ocbimv22039583m.p C2H2 ZF 207 229
Ocbimv22039583m.p C2H2 ZF 235 256

Links

Other C2H2 ZF family TFs
Other Octopus bimaculoides TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK20942.1 Cannabis sativa PK20942.1 D 0.000
AT1G06070 Arabidopsis thaliana AT1G06070 D 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I 0.000
Aquca_058_00063 Aquilegia coerulea Aquca_058_00063 I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I 0.000
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I 0.000
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I 0.000
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
Carubv10008993m.g Capsella rubella Carubv10008993m.g I 0.000
Cucsa.251880 Cucumis sativus Cucsa.251880 I 0.000
Cucsa.062530 Cucumis sativus Cucsa.062530 I 0.000
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
cassava32399.m1 Manihot esculenta cassava32399.m1 I 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
Pm007522 Prunus mume Pm007522 I 0.000
Cla022204 Citrullus lanatus Cla022204 I 0.000
Cla022201 Citrullus lanatus Cla022201 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
MDP0000435971 Malus domestica MDP0000435971 I 0.000
MDP0000234166 Malus domestica MDP0000234166 I 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
Lus10019376.g Linum usitatissimum Lus10019376.g I 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Lus10008150.g Linum usitatissimum Lus10008150.g I 0.000
PK00843.1 Cannabis sativa PK00843.1 I 0.000
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I 0.000
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
MLOC_64781 Hordeum vulgare MLOC_64781 I 0.000
MLOC_64362 Hordeum vulgare MLOC_64362 I 0.000
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I 0.000
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I 0.000
GLYMA15G03350 Glycine max GLYMA15G03350 I 0.000
GLYMA13G42030 Glycine max GLYMA13G42030 I 0.000
GLYMA12G05520 Glycine max GLYMA12G05520 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
GLYMA11G13510 Glycine max GLYMA11G13510 I 0.000
Ca_02692 Cicer arietinum Ca_02692 I 0.000
GLYMA04G02850 Glycine max GLYMA04G02850 I 0.000
F775_13434 Aegilops tauschii F775_13434 I 0.000
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
Bra030637 Brassica rapa Bra030637 I 0.000
Bra015471 Brassica rapa Bra015471 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
Bo8g005940 Brassica oleracea Bo8g005940 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
Bo5g007170 Brassica oleracea Bo5g007170 I 0.000
Bo3g149620 Brassica oleracea Bo3g149620 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000
TRIUR3_16287 Triticum urartu TRIUR3_16287 I 0.000
Traes_7DS_47B5A7FFF Triticum aestivum Traes_7DS_47B5A7FFF I 0.000
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I 0.000
TCM_019998 Theobroma cacao TCM_019998 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I 0.000
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I 0.000
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I 0.000
Sb06g021350 Sorghum bicolor Sb06g021350 I 0.000
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
RF2A Oryza sativa OS09G0516200 I 0.000
OMERI09G12160 Oryza meridionalis OMERI09G12160 I 0.000
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I 0.000
OB09G23080 Oryza brachyantha OB09G23080 I 0.000
Carubv10004500m.g Capsella rubella Carubv10004500m.g N 0.000
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N 0.000