Sakowv30016612m.g (Saccoglossus kowalevskii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Sakowv30016612m.g T142291_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.813 0.974
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.813 0.974
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.813 0.974
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.813 0.974
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.802 0.896
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.802 0.896
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.802 0.896
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.802 0.896
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.793 0.878
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.793 0.878
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.793 0.878
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23933885_peptide C2H2 ZF 203 225
23933885_peptide C2H2 ZF 231 253
23933885_peptide C2H2 ZF 259 281
23933885_peptide C2H2 ZF 287 309
23933885_peptide C2H2 ZF 315 337

Links

Other C2H2 ZF family TFs
Other Saccoglossus kowalevskii TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N
OMERI01G40940 Oryza meridionalis OMERI01G40940 N
ONIVA01G50120 Oryza nivara ONIVA01G50120 N
OPUNC01G43070 Oryza punctata OPUNC01G43070 N
ORGLA01G0380200 Oryza glaberrima ORGLA01G0380200 N
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N
OS01G0952800 Oryza sativa OS01G0952800 N
Sb03g046090 Sorghum bicolor Sb03g046090 N
Si002720m.g Setaria italica Si002720m.g N
OLONG_006457 Oryza longistaminata OLONG_006457 N
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N
Traes_3AL_95403ABBA Triticum aestivum Traes_3AL_95403ABBA N
TRAES3BF136000020CFD_g Triticum aestivum TRAES3BF136000020CFD_g N
TRIUR3_18175 Triticum urartu TRIUR3_18175 N
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N
Pavir.J04771 Panicum virgatum Pavir.J04771 N
AC193786.3_FG005 Zea mays AC193786.3_FG005 N
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N
OBART01G44150 Oryza barthii OBART01G44150 N
OB01G53300 Oryza brachyantha OB01G53300 N
MLOC_72280 Hordeum vulgare MLOC_72280 N
MLOC_67053 Hordeum vulgare MLOC_67053 N
MLOC_36351 Hordeum vulgare MLOC_36351 N
LPERR01G38470 Leersia perrieri LPERR01G38470 N
GRMZM2G057413 Zea mays GRMZM2G057413 N
F775_31854 Aegilops tauschii F775_31854 N
F775_19529 Aegilops tauschii F775_19529 N
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N
BRADI2G61050 Brachypodium distachyon BRADI2G61050 N
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N
BGIOSGA005178 Oryza indica BGIOSGA005178 N
BGIOSGA000097 Oryza indica BGIOSGA000097 N