Carubv10017660m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017660m.g T142729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.827 0.978
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.827 0.957
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.717
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017660m C2H2 ZF 201 223
Carubv10017660m C2H2 ZF 254 276

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HCBG_00900 Histoplasma capsulatum HCBG_00900 D
PAAG_01064 Paracoccidioides sp lutzii PAAG_01064 I
PV08_05635 Exophiala spinifera PV08_05635 I
PV07_10272 Cladophialophora immunda PV07_10272 I
PV06_03201 Exophiala oligosperma PV06_03201 I
PV05_11407 Exophiala xenobiotica PV05_11407 I
PV04_01647 Capronia semiimmersa PV04_01647 I
PTT_18239 Pyrenophora teres PTT_18239 I
PFICI_02022 Pestalotiopsis fici PFICI_02022 I
PABG_01647 Paracoccidioides brasiliensis PABG_01647 I
PV10_06256 Exophiala mesophila PV10_06256 I
OIDMADRAFT_117495 Oidiodendron maius OIDMADRAFT_117495 I
MYCTH_77476 Myceliophthora thermophila MYCTH_77476 I
Mycgr3G49965 Zymoseptoria tritici Mycgr3G49965 I
MYCFIDRAFT_60981 Pseudocercospora fijiensis MYCFIDRAFT_60981 I
CIMG_01041 Coccidioides immitis CIMG_01041 I
MBM_02592 Marssonina brunnea MBM_02592 I
MAPG_06349 Magnaporthe poae MAPG_06349 I
UCRPA7_6713 Togninia minima UCRPA7_6713 I
estExt_fgenesh1_pg.C_50728 Cryphonectria parasitica estExt_fgenesh1_pg.C_50728 I
estExt_Genewise1Plus.C_380118 Mycosphaerella fijiensis estExt_Genewise1Plus.C_380118 I
estExt_Genewise1Plus.C_100794 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_100794 I
e_gw1.11.537.1 Mycosphaerella graminicola e_gw1.11.537.1 I
Z519_03111 Cladophialophora bantiana Z519_03111 I
Z518_03932 Rhinocladiella mackenziei Z518_03932 I
Z517_08474 Fonsecaea pedrosoi Z517_08474 I
V499_08165 Pseudogymnoascus pannorum V499_08165 I
MGG_04729 Magnaporthe oryzae MGG_04729 I
UCREL1_7924 Eutypa lata UCREL1_7924 I
THITE_2112431 Thielavia terrestris THITE_2112431 I
SETTUDRAFT_103803 Setosphaeria turcica SETTUDRAFT_103803 I
SEPMUDRAFT_52418 Sphaerulina musiva SEPMUDRAFT_52418 I
SBOR_1325 Sclerotinia borealis SBOR_1325 I
SAPIO_CDS3166 Scedosporium apiospermum SAPIO_CDS3166 I
PV11_07704 Exophiala sideris PV11_07704 I
BGHDH14_bgh02178 Blumeria graminis BGHDH14_bgh02178 I
COCMIDRAFT_23818 Bipolaris oryzae COCMIDRAFT_23818 I
COCCADRAFT_21472 Bipolaris zeicola COCCADRAFT_21472 I
M437DRAFT_14468 Aureobasidium melanogenum M437DRAFT_14468 I
Cob_08038 Colletotrichum orbiculare Cob_08038 I
CHGG_05934 Chaetomium globosum CHGG_05934 I
CH063_10875 Colletotrichum higginsianum CH063_10875 I
CGGC5_6423 Colletotrichum gloeosporioides CGGC5_6423 I
CFIO01_12884 Colletotrichum fioriniae CFIO01_12884 I
COCC4DRAFT_62452 Bipolaris maydis COCC4DRAFT_62452 I
BDDG_00695 Blastomyces dermatitidis BDDG_00695 I
Bcin01g06300 Botrytis cinerea Bcin01g06300 I
BAUCODRAFT_119725 Baudoinia compniacensis BAUCODRAFT_119725 I
A1O9_01459 Exophiala aquamarina A1O9_01459 I
A1O7_00422 Cladophialophora yegresii A1O7_00422 I
A1O5_03789 Cladophialophora psammophila A1O5_03789 I
A1O1_00440 Capronia coronata A1O1_00440 I
COCVIDRAFT_38721 Bipolaris victoriae COCVIDRAFT_38721 I
LEMA_P095280.1 Leptosphaeria maculans LEMA_P095280.1 I
HMPREF1541_05909 Cyphellophora europaea HMPREF1541_05909 I
HMPREF1120_06024 Exophiala dermatitidis HMPREF1120_06024 I
GMDG_04728 Pseudogymnoascus destructans GMDG_04728 I
GLRG_04444 Colletotrichum graminicola GLRG_04444 I
GGTG_01991 Gaeumannomyces graminis GGTG_01991 I
G647_00459 Cladophialophora carrionii G647_00459 I
F503_02611 Ophiostoma piceae uamh F503_02611 I
DOTSEDRAFT_74982 Dothistroma septosporum DOTSEDRAFT_74982 I
CSUB01_11791 Colletotrichum sublineola CSUB01_11791 I
CPC735_053190 Coccidioides posadasii CPC735_053190 I
COCSADRAFT_276273 Bipolaris sorokiniana COCSADRAFT_276273 I
FFUJ_01228 Fusarium fujikuroi FFUJ_01228 N
TRIATDRAFT_297376 Trichoderma atroviride TRIATDRAFT_297376 N
TRIREDRAFT_56863 Trichoderma reesei TRIREDRAFT_56863 N
TRIVIDRAFT_173229 Trichoderma virens TRIVIDRAFT_173229 N
OCS_04756 Ophiocordyceps sinensis OCS_04756 N
VHEMI04007 Torrubiella hemipterigena VHEMI04007 N
X797_003701 Metarhizium robertsii X797_003701 N
BBA_00362 Beauveria bassiana BBA_00362 N
ACRE_042290 Acremonium chrysogenum ACRE_042290 N
MGU_04950 Metarhizium guizhouense MGU_04950 N
CPUR_06219 Claviceps purpurea CPUR_06219 N