Eucgr.B02396 (Eucalyptus grandis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Eucgr.B02396 T142830_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.739
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.776 0.848
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B02396.1 C2H2 ZF 43 65
Eucgr.B02396.1 C2H2 ZF 92 114

Links

Other C2H2 ZF family TFs
Other Eucalyptus grandis TFs

376 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA01G42540 Oryza nivara ONIVA01G42540 N 0.000
Pavir.J13941 Panicum virgatum Pavir.J13941 N 0.000
Sb01g013830 Sorghum bicolor Sb01g013830 N 0.000
OS01G0855400 Oryza sativa OS01G0855400 N 0.000
ORUFI07G08780 Oryza rufipogon ORUFI07G08780 N 0.000
ORUFI07G07460 Oryza rufipogon ORUFI07G07460 N 0.000
ORUFI07G07450 Oryza rufipogon ORUFI07G07450 N 0.000
ORUFI01G41050 Oryza rufipogon ORUFI01G41050 N 0.000
ORGLA07G0073600 Oryza glaberrima ORGLA07G0073600 N 0.000
ORGLA07G0062800 Oryza glaberrima ORGLA07G0062800 N 0.000
OPUNC07G08180 Oryza punctata OPUNC07G08180 N 0.000
OPUNC07G07180 Oryza punctata OPUNC07G07180 N 0.000
OPUNC01G36560 Oryza punctata OPUNC01G36560 N 0.000
ONIVA07G07540 Oryza nivara ONIVA07G07540 N 0.000
ONIVA07G05990 Oryza nivara ONIVA07G05990 N 0.000
ONIVA07G05980 Oryza nivara ONIVA07G05980 N 0.000
BGIOSGA004824 Oryza indica BGIOSGA004824 N 0.000
OMERI07G07070 Oryza meridionalis OMERI07G07070 N 0.000
OLONG_023640 Oryza longistaminata OLONG_023640 N 0.000
OLONG_021151 Oryza longistaminata OLONG_021151 N 0.000
OLONG_012136 Oryza longistaminata OLONG_012136 N 0.000
OGLUM07G07870 Oryza glumaepatula OGLUM07G07870 N 0.000
OGLUM07G07150 Oryza glumaepatula OGLUM07G07150 N 0.000
OBART07G08680 Oryza barthii OBART07G08680 N 0.000
OBART07G07450 Oryza barthii OBART07G07450 N 0.000
OBART01G37720 Oryza barthii OBART01G37720 N 0.000
OB01G46450 Oryza brachyantha OB01G46450 N 0.000
LPERR01G32380 Leersia perrieri LPERR01G32380 N 0.000
GRMZM2G121570 Zea mays GRMZM2G121570 N 0.000
BGIOSGA025449 Oryza indica BGIOSGA025449 N 0.000
BGIOSGA024590 Oryza indica BGIOSGA024590 N 0.000