Pavir.J30713 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J30713 T143424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.773 0.717
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J30713.1.p C2H2 ZF 50 72
Pavir.J30713.1.p C2H2 ZF 100 122

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF282 Homo sapiens ENSG00000170265 D
ZNF282 Otolemur garnettii ENSOGAG00000030129 I
Myotis_brandtii_ZNF282_10025638 Myotis brandtii Myotis_brandtii_ZNF282_10025638 I
Alligator_sinensis_CCG005558.1 Alligator sinensis Alligator_sinensis_CCG005558.1 I
ZNF282 Tursiops truncatus ENSTTRG00000015685 I
ZNF282 Tupaia belangeri ENSTBEG00000000091 I
ENSSTOG00000021295 Ictidomys tridecemlineatus ENSSTOG00000021295 I
ZNF282 Sus scrofa ENSSSCG00000016773 I
ENSSHAG00000018278 Sarcophilus harrisii ENSSHAG00000018278 I
Zfp282 Rattus norvegicus ENSRNOG00000026981 I
ZNF282 Pan troglodytes ENSPTRG00000019841 I
ENSPANG00000008719 Papio anubis ENSPANG00000008719 I
ZNF282 Ochotona princeps ENSOPRG00000010540 I
ZNF282 Bos taurus ENSBTAG00000020448 I
ZNF282 Oryctolagus cuniculus ENSOCUG00000008423 I
Zfp282 Mus musculus ENSMUSG00000025821 I
ENSMPUG00000006666 Mustela putorius furo ENSMPUG00000006666 I
ZNF282 Monodelphis domestica ENSMODG00000001987 I
ZNF282 Macaca mulatta ENSMMUG00000000767 I
ZNF282 Myotis lucifugus ENSMLUG00000010622 I
ENSMICG00000016620 Microcebus murinus ENSMICG00000016620 I
ZNF398 Gorilla gorilla ENSGGOG00000005812 I
ZNF282 Dasypus novemcinctus ENSDNOG00000008361 I
ENSCSAG00000007010 Chlorocebus sabaeus ENSCSAG00000007010 I