Scas_Contig709.32 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig709.32 T144971_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSN4
M00032_2.00 		Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN		 PBM
Badis et al.(2008)
MSN4_2121 		0.785 0.826
MSN4
M07462_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1 		0.785 0.826
MSN4
M08533_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YKL062W_518 		0.785 0.826
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.781 0.761
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.761 0.783
MSN2
M00036_2.00 		Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN		 PBM
Badis et al.(2008)
MSN2_2101 		0.761 0.783
MSN2
M07466_2.00 		Saccharomyces cerevisiae
CCCCY
RGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1 		0.761 0.783
MSN2
M08538_2.00 		Saccharomyces cerevisiae
NHYCCKN
NMGGRDN		 Misc
DeBoer et al.(2011)
YMR037C_1380 		0.761 0.783
MSN2
M10399_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MSN2_Q4 		0.761 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig709.32 C2H2 ZF 765 788
Scas_Contig709.32 C2H2 ZF 794 816

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I
F443_20671 Phytophthora parasitica F443_20671 I
Physo132943 Phytophthora sojae Physo132943 I
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I
PK06453.1 Cannabis sativa PK06453.1 I
Physo132945 Phytophthora sojae Physo132945 I
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I
Physo132946 Phytophthora sojae Physo132946 I
PYU1_G002849 Pythium ultimum PYU1_G002849 I
PYU1_G002835 Pythium ultimum PYU1_G002835 I
PITG_14400 Phytophthora infestans PITG_14400 I
Phyra80925 Phytophthora ramorum Phyra80925 N
maker-piw_contig_637-snap-gene-0.12 Pythium iwayamai maker-piw_contig_637-snap-gene-0.12 N
Physo131337 Phytophthora sojae Physo131337 N
PYU1_G003089 Pythium ultimum PYU1_G003089 N
snap_masked-pir_contig_524-abinit-gene-0.18 Pythium irregulare snap_masked-pir_contig_524-abinit-gene-0.18 N
estExt_fgenesh1_kg.C_01146 Phytophthora capsici estExt_fgenesh1_kg.C_01146 N
estExt_fgenesh1_pg.C_40260 Phytophthora capsici estExt_fgenesh1_pg.C_40260 N
estExt_fgenesh1_pm.C_680840001 Phytophthora capsici estExt_fgenesh1_pm.C_680840001 N
fgenesh1_pg.C_scaffold_11000265 Phytophthora capsici fgenesh1_pg.C_scaffold_11000265 N
Phyra73321 Phytophthora ramorum Phyra73321 N
maker-pve_contig_364-fgenesh-gene-0.6 Pythium vexans maker-pve_contig_364-fgenesh-gene-0.6 N
ALNC14_029500 Albugo laibachii ALNC14_029500 N
maker-piw_contig_4506-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_4506-fgenesh-gene-0.0 N
maker-piw_contig_1647-snap-gene-0.3 Pythium iwayamai maker-piw_contig_1647-snap-gene-0.3 N
maker-piw_contig_1647-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1647-fgenesh-gene-0.1 N
maker-pir_contig_524-snap-gene-0.12 Pythium irregulare maker-pir_contig_524-snap-gene-0.12 N
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N
maker-pir_contig_1094-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1094-fgenesh-gene-0.0 N
maker-pag1_scaffold_154-snap-gene-0.26 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.26 N
maker-pag1_scaffold_154-snap-gene-0.25 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.25 N
fgenesh_scip_prom.46568.9767 Phytophthora kernoviae fgenesh_scip_prom.46568.9767 N
fgenesh_scip_prom.46568.7327 Phytophthora kernoviae fgenesh_scip_prom.46568.7327 N
fgenesh_scip_prom.28083.3853 Phytophthora lateralis fgenesh_scip_prom.28083.3853 N
F443_16339 Phytophthora parasitica F443_16339 N
F443_03239 Phytophthora parasitica F443_03239 N