gfi1b.L (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-944429 T145637_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.798 0.913
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.798 0.913
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.798 0.913
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.798 0.913
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.798 0.913
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.798 0.913
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.796 0.906
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.796 0.906
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.796 0.906
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.788 0.906
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.766 0.877
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.766 0.877
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.766 0.877
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.766 0.877
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.766 0.877
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.766 0.877
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.766 0.877
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.766 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.765 0.819
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.764 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH77878 C2H2 ZF 176 199
AAH77878 C2H2 ZF 205 227
AAH77878 C2H2 ZF 233 255
AAH77878 C2H2 ZF 261 283
AAH77878 C2H2 ZF 289 311
AAH77878 C2H2 ZF 317 340

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GFI1 Homo sapiens ENSG00000162676 D 0.766
GFI1B Homo sapiens ENSG00000165702 D 0.798
Gfi1b Mus musculus ENSMUSG00000026815 D 0.796
Gfi1 Mus musculus ENSMUSG00000029275 D 0.766
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.766
sens-2 Drosophila melanogaster FBgn0051632 D 0.765
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.763
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.768
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.766
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.766
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.795
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.768
GFI1B Bos taurus ENSBTAG00000012772 I 0.786
GFI1 Bos taurus ENSBTAG00000016723 I 0.768
GFI1B Canis familiaris ENSCAFG00000019877 I 0.794
GFI1 Canis familiaris ENSCAFG00000020155 I 0.766
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.766
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.798
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.766
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.788
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.796
gfi1aa Danio rerio ENSDARG00000020746 I 0.768
gfi1ab Danio rerio ENSDARG00000044457 I 0.768
gfi1b Danio rerio ENSDARG00000079947 I 0.787
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.766
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.794
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.788
GFI1 Equus caballus ENSECAG00000006647 I 0.768
GFI1B Equus caballus ENSECAG00000008127 I 0.794
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.766
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.795
GFI1 Felis catus ENSFCAG00000005914 I 0.766
GFI1B Felis catus ENSFCAG00000027147 I 0.796
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.758
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.768
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.789
GFI1B Gallus gallus ENSGALG00000003478 I 0.795
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.768
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.766
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.798
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.768
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.760
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.787
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.797
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.768
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.766
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.783
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.772
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.789
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.795
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.768
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.783
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.768
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.766
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.786
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.766
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.794
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.766
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.794
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.766
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.798
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.802
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.798
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.788
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.766
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.762
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.799
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.770
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.766
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.762
gfi1b Oryzias latipes ENSORLG00000014390 I 0.801
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.766
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.796
GFI1B Procavia capensis ENSPCAG00000012329 I 0.788
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.791
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.762
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.770
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.798
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.768
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.799
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.798
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.768
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.798
GFI1B Sus scrofa ENSSSCG00000005737 I 0.796
GFI1 Sus scrofa ENSSSCG00000006902 I 0.768
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.766
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.796
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.768
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.768
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.797
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.770
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.797
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.761
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.768
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.762
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.765
GF15430 Drosophila ananassae FBgn0092455 I 0.765
GG10437 Drosophila erecta FBgn0102746 I 0.765
GH13715 Drosophila grimshawi FBgn0121191 I 0.765
GI23984 Drosophila mojavensis FBgn0146708 I 0.765
GL26188 Drosophila persimilis FBgn0163770 I 0.765
GM16223 Drosophila sechellia FBgn0171139 I 0.765
GJ21268 Drosophila virilis FBgn0208401 I 0.765
GK24242 Drosophila willistoni FBgn0226203 I 0.765
GE14143 Drosophila yakuba FBgn0231766 I 0.765
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.758
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.765
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.759
Aan_R000889 Calypte anna Aan_R000889 I 0.768
Aan_R008865 Calypte anna Aan_R008865 I 0.795
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.795
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.768
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.768
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.768
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.766
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.799
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.786
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.764
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.796
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.762
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.795
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.768
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.769
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.768
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.768
Tal_R001363 Tyto alba Tal_R001363 I 0.797
Tal_R006464 Tyto alba Tal_R006464 I 0.768
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.757
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.827
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.766
MDOA011065 Musca domestica MDOA011065 I 0.765