CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

3988_YDL020C *(Saccharomyces bayanus)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	3988_YDL020C	T145980_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RPN4 M00017_2.00	Saccharomyces cerevisiae	NNCGCCACCN	NGGTGGCGNN	PBM Badis et al.(2008) RPN4_2137	0.827	1.000
RPN4 M01525_2.00	Saccharomyces cerevisiae	NWWWWWWWWN	NWWWWWWWWN	PBM Zhu et al.(2009) Rpn4	0.827	1.000
RPN4 M07447_2.00	Saccharomyces cerevisiae	CGCCACY	RGTGGCG	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0373.1	0.827	1.000
RPN4 M08511_2.00	Saccharomyces cerevisiae	NNNRGTGGCRAM	KTYGCCACYNNN	Misc DeBoer et al.(2011) YDL020C_1700	0.827	1.000
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
3988_YDL020C	C2H2 ZF	454	472	CGAQFSRSYDLTRHQNTIH
3988_YDL020C	C2H2 ZF	479	511	FRCSECIKILGSEGYQKTFSRLDALTRHIKSKH

Links
Other C2H2 ZF family TFs
Other *Saccharomyces bayanus* TFs