snap_masked-nMf.1.1.scaf00860-processed-gene-0.9 (Meloidogyne floridensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 snap_masked-nMf.1.1.scaf00860-processed-gene-0.9 T156462_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ztf-2
M01866_2.00 		Caenorhabditis elegans
NYWGRAMCHN
NDGKTYCWRN		 PBM
Weirauch et al.(2014)
pTH9049 		0.792 0.911
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
snap_masked-nMf.1.1.scaf00860-processed-gene-0.9-mRNA-1 C2H2 ZF 1 22
snap_masked-nMf.1.1.scaf00860-processed-gene-0.9-mRNA-1 C2H2 ZF 28 51

Links

Other C2H2 ZF family TFs
Other Meloidogyne floridensis TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ztf-2 Caenorhabditis elegans WBGene00008762 D 0.792
ANCDUO_06400 Ancylostoma duodenale ANCDUO_06400 I 0.762
TCLT_0000332301 Thelazia callipaeda TCLT_0000332301 I 0.770